Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 629 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 612 / 0 STP12 sugar transporter protein 12 (.1) AT3G19930 577 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G26340 566 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 565 / 0 Major facilitator superfamily protein (.1) AT1G50310 558 / 0 ATSTP9 sugar transporter 9 (.1) AT5G23270 555 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G02050 530 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 518 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G26250 468 / 1e-161 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G109765 [exp] 996 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 976 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 976 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G033600 [exp] 605 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 599 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 585 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 584 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 583 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 579 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018422 [exp] 606 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 588 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 580 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10042516 [exp] 569 / 0 AT1G11260 608 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 564 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 563 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040991 [exp] 547 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 522 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10005870 [exp] 487 / 6e-169 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 481 / 2e-166 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G110630.1 pacid=42796739 polypeptide=Potri.004G110630.1.p locus=Potri.004G110630 ID=Potri.004G110630.1.v4.1 annot-version=v4.1 ATGGGTGCTGGTGGTTTTGTTGCCGGTGATGTTAAAAACTATCCCGGAAAGGTCACTCGGCATGTGGTAAATGCTTGTGTGCTAGGAGCCATGGGAGGAT TAATTTTCGGATACGACCTTGGTATCTCGGGTGGTGTGACGTCTATGGCTCCCTTTTTGAATAAATTTTTCCCAGATGTTTATCGTAAGGAAGCATTAGA TACATCCACTAATCAATATTGCAAGTTTAACGATATGGGGCTAACCTTGTTCACATCTTCATTATACCTGGCTGCATTAATTGCATCTTTTGGAGCTTCT TATATCACAAGGACGTGGGGTCGGAAAAGAACAATGCTCCTTGGTGGCATCATATTTTTCATCGGAGCTGCTCTCAATGCCGGTGCTGTGGACCTCTCAA TGCTCATCGCCGGTCGCATTCTCTTAGGTGTTGGAGTTGGTTTTTCAACTCAGTCTGTGCCGCTCTATGTCTCCGAGATGGCTCCACAAAAACATCGTGG TGCTTTCAACATTGTGTTCCAACTAGCAATCACTATTGGCATTTTCATAGCTAATCTTGTCAATTACTTGACACCTAAGATTGCTGGAAACCAAGCATGG CGTTACAGCTTAGGCGGAGCGACCATTCCTGCAGCCCTCATCTGTCTTTCAGCACTTAAACTGGATGACACTCCAAACTCGTTGTTAGAGCAAGGGAAAG CTGAAAAAGCTCGAGAAATACATAGAAAGATACGTGGCCTTAATGACAAGGAAATTGAGGCTGAGTTTCAAGATTTAGTCACGGCCAGTGAGGCAGCCAA GCAAGTGGAGCATCCCTGGACTAGAATCCTTAAGAGACAGTATCGGCCGCAACTGACCATGGCTGTTGCTATTCCATTTTTCCAACAACTTACTGGGATG AATGTGGTCATGTTCTATGCTCCTGTTCTCCTCCAAAGTATTGGTTTTGAAAATAATGCTTCCCTCTTATCCACAGTTATCACTGGCGCTGTTAACATTC TTGCCACCGGTGTTTCAATCTATGGCAGTGATAAGTCTGGAAGAAGATCTCTGTTTCTTTCAGGTGGAGCTGTAATGTTTGTATTTCAGGTTGCGCTAGC AGTTTTAATCGGATCCAAGTTTGGAACATCTGGAGATGTGATTGAATTGCCAAAGTGGTATGCCGGTATAGTTGTAGCGTGTATCTGCATATTTGTTTCT GCCTTTGCGTGGTCATGGGGGCCATTGGGATGGCTAGTTCCAAGTGAAATATTTCCGCTAGAAATTCGATCAGCCGGGCAAAGCATCACCGTGGCAGTCA ACATGTTATTCACTTTCTTCATAGCTCAGCTTTTCCTCGCAATGCTTTGCCACTTTAAATTTGGTTTGTTCATCTTCTTTGCAATCTTTGTGGCAATCAT GAGTACCTTCATCTTTTTCTTTTTGCCTGAGACGATGAACATCCCCATTGAAGAGATGTCTAGAGTGTGGAAGCAACATTGGTATTGGAGGAGGTTCATG CTTGATGAAGATGATGATCGCCGAGCTTCGGATCTCATGGTCTAG
AA sequence Show only first row Show all	>Potri.004G110630.1 pacid=42796739 polypeptide=Potri.004G110630.1.p locus=Potri.004G110630 ID=Potri.004G110630.1.v4.1 annot-version=v4.1 MGAGGFVAGDVKNYPGKVTRHVVNACVLGAMGGLIFGYDLGISGGVTSMAPFLNKFFPDVYRKEALDTSTNQYCKFNDMGLTLFTSSLYLAALIASFGAS YITRTWGRKRTMLLGGIIFFIGAALNAGAVDLSMLIAGRILLGVGVGFSTQSVPLYVSEMAPQKHRGAFNIVFQLAITIGIFIANLVNYLTPKIAGNQAW RYSLGGATIPAALICLSALKLDDTPNSLLEQGKAEKAREIHRKIRGLNDKEIEAEFQDLVTASEAAKQVEHPWTRILKRQYRPQLTMAVAIPFFQQLTGM NVVMFYAPVLLQSIGFENNASLLSTVITGAVNILATGVSIYGSDKSGRRSLFLSGGAVMFVFQVALAVLIGSKFGTSGDVIELPKWYAGIVVACICIFVS AFAWSWGPLGWLVPSEIFPLEIRSAGQSITVAVNMLFTFFIAQLFLAMLCHFKFGLFIFFAIFVAIMSTFIFFFLPETMNIPIEEMSRVWKQHWYWRRFM LDEDDDRRASDLMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G110630 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	11.74	0.7357	ACO4
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.004G194600 [exp]	17.88	0.6617	GER2.24
					Potri.010G070301 [exp]	50.64	0.6711
AT5G47900			Protein of unknown function (D...		Potri.001G071500 [exp]	98.23	0.6238
AT1G64290			F-box protein-related (.1)		Potri.008G038000 [exp]	114.00	0.6224
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Potri.011G021900 [exp]	133.65	0.6103
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Potri.018G152100 [exp]	157.70	0.6029	Pt-BETA-TIP.1
					Potri.017G041400 [exp]	175.70	0.6015
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.008G033300 [exp]	226.02	0.5904
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G109765 [exp]	277.81	0.5828

Compare expression of checked genes

Potri.004G110630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.