Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02350 860 / 0 GAUT9 galacturonosyltransferase 9 (.1) AT3G25140 783 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G61130 469 / 8e-159 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 463 / 4e-157 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 446 / 5e-150 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 418 / 7e-141 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 397 / 1e-132 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 377 / 8e-125 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT5G54690 330 / 1e-106 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT5G15470 315 / 8e-101 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106800 [exp] 971 / 0 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G246500 [exp] 793 / 0 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G010000 [exp] 603 / 0 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G151400 [exp] 474 / 1e-160 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 471 / 3e-159 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 455 / 3e-153 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 451 / 7e-152 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 446 / 6e-151 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.013G146200 [exp] 400 / 6e-134 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003045 [exp] 836 / 0 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10011834 [exp] 771 / 0 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10022766 [exp] 509 / 4e-180 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009311 [exp] 473 / 2e-160 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 471 / 6e-160 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 471 / 3e-158 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 458 / 1e-154 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 454 / 5e-148 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10018554 [exp] 411 / 6e-138 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013832 [exp] 434 / 1e-135 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.004G111000.1 pacid=42793766 polypeptide=Potri.004G111000.1.p locus=Potri.004G111000 ID=Potri.004G111000.1.v4.1 annot-version=v4.1 ATGGCGCTGGCGGCCCGAGGAACCCGAGGGGGAGGCAGCGGCGGCATCAACGGTGGACTCCGCCCTTTTTTCTCTTACCGGATCTTCATCTCTGCCATTT TCACTCTTCTCTTCCTCGCTACTTTCTCCATTCTATTCTCCTCTCACCATCACCATCACCATCACCATCACGAAGACGACTCACTGCCTAGTAGCGGAAA TGCTTACGTACAACGTACCTTTTTGGCGGTTAAATCAGATCCCTTAAAAACACGATTAGATTTGATATATAAACAAGCGAATGATCACATGACTTTAGTC AATGCATACGCCGCGTATGCGAGAAAGCTCAAGCTTGATATTTCTAAACAGTTAAGAATGTTTGATGAATTAGCTAAGAATTTAACGGATTTACCTTTGA AACCGAGTTATAAATCCTCCCTTTTCGAGCCGGGTAGTCCGGTGGATGAGGATGTTTTAAGGCAATTTGAGAAGGAAGTTAAGGATATAGTGAAAGTTGC CAGGTTAATGATAGTGGAATCGAAGGAGAGTTATGATAATCAGATAAAAATTCAGAAGTTGAAAGATACGATTTTTGCGGTTAATGAGTTGTTAATTAAG GCCAAGAAGAATGGAGCGTTTGCGAGCTTGATTTCTGCCAAGTCTGTACCGAAGAGTTTGCATTGTTTGGCGATGAGGCTTGTGGAGGAGAGGGTTGCCC ATCCGGAGAAGTACAAGGAGGAAGGGTATAAGGAGGAGTTTGAGGATCCAAGTTTGTATCATTATGCTATTTTTTCAGATAATGTGATTGCGGTTTCAGT TTTGATTAGGTCTGTGGTGAAGAATGCGGAGGAACCGTGGAAACATGTTTTTCACGTGGTTACAGATAGGATGAATGTTGCAGCTATGAAGGTTTGGTTT AGGATGCGGCCTGTGGAAGGTGGCGCTTTTGTAGGGATCAAGGCAGTGGAGGAGTATAGATTCTTGAATTCATCATATGTGCCGGTTTTGAGGCAGCTTG AGAATGCTAATATGCAGAAGTTTTATTTTGAGAATCAGGCAGAGAATGCTACCAAAGATTCGACTAATATGAAGTTTCGGAACCCTAAGTACTTGTCTAT GTTGAATCATCTTCGGTTTTATTTGCCAGAGATGTATCCTAAGTTGCATAAAATTTTGTTTTTGGATGATGATGTTGTGGTTCAGAAGGATTTGACTGGG TTGTGGAAGGTTGATTTGGATGGTAAGGTGAATGGAGCTGTTGAGACTTGCTTTGGATCATTTCATCGTTATGCACAGTATTTGAACTTTTCACATCCTT TGATTAAGGAGAGGTTTAATCCCAAGGCCTGTGCCTGGGCTTTTGGGATGAATATATTTGATCTTGATGCATGGAGGCGGGAGAAATGCACAGAGCAGTA TCATTATTGGCAGAGCCTGAATGAGGAACGCACTCTATGGAAACTGGGTACTCTTCCACCTGGCTTGATCACCTTTTACTCAACGACGAAGTCCCTGGAC AAATCCTGGCATGTGCTTGGCCTCGGATATAATCCAAGTATTAGTATGGACGAGATCAGCAACGCTGCTGTCATTCATTATAATGGAAACATGAAACCTT GGCTTGACATTGCAATGAACCAGTACAAGAATCTCTGGACTAAGTATGTAGACAATGATATGGAATTTGTTCAGACATGCAATTTTGGCCTTTAG
AA sequence Show only first row Show all	>Potri.004G111000.1 pacid=42793766 polypeptide=Potri.004G111000.1.p locus=Potri.004G111000 ID=Potri.004G111000.1.v4.1 annot-version=v4.1 MALAARGTRGGGSGGINGGLRPFFSYRIFISAIFTLLFLATFSILFSSHHHHHHHHHEDDSLPSSGNAYVQRTFLAVKSDPLKTRLDLIYKQANDHMTLV NAYAAYARKLKLDISKQLRMFDELAKNLTDLPLKPSYKSSLFEPGSPVDEDVLRQFEKEVKDIVKVARLMIVESKESYDNQIKIQKLKDTIFAVNELLIK AKKNGAFASLISAKSVPKSLHCLAMRLVEERVAHPEKYKEEGYKEEFEDPSLYHYAIFSDNVIAVSVLIRSVVKNAEEPWKHVFHVVTDRMNVAAMKVWF RMRPVEGGAFVGIKAVEEYRFLNSSYVPVLRQLENANMQKFYFENQAENATKDSTNMKFRNPKYLSMLNHLRFYLPEMYPKLHKILFLDDDVVVQKDLTG LWKVDLDGKVNGAVETCFGSFHRYAQYLNFSHPLIKERFNPKACAWAFGMNIFDLDAWRREKCTEQYHYWQSLNEERTLWKLGTLPPGLITFYSTTKSLD KSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIAMNQYKNLWTKYVDNDMEFVQTCNFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	0	1
AT1G71780			unknown protein		Potri.002G062300 [exp]	3.46	0.9102
AT1G76670			Nucleotide-sugar transporter f...		Potri.002G000500 [exp]	3.46	0.9154
AT4G01400			unknown protein		Potri.002G179600 [exp]	6.00	0.9144
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	7.00	0.9172
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.007G104000 [exp]	11.66	0.8842
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.001G278900 [exp]	11.83	0.8831	Pt-SIRANBP.1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	16.88	0.9001
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	17.54	0.9003	Pt-RIC2.1
AT3G45400			exostosin family protein (.1)		Potri.019G044600 [exp]	18.24	0.8822
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.010G132500 [exp]	18.43	0.8994

Compare expression of checked genes

Potri.004G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.