Plant FIBer expression Database

Potri.004G111232 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G111232.1 pacid=42794406 polypeptide=Potri.004G111232.1.p locus=Potri.004G111232 ID=Potri.004G111232.1.v4.1 annot-version=v4.1
ATGGCCAAGCACACCGAGAATGAATCGTGCTACTCGGTTGAGAATCCTAGCAGCCTTATCGTGGAGATGGGTGAACTAAGCCTCGAATCTCCAAACTTTG
AGATGATGAATGACGACGAGGCAGCAACAAATATTGTAGAAGCAGCAGCAACCTCTAGCAAGAAGGGCATTTTCGAGAGATGGGCTAATGCATTGGTGAT
GGTGCCTTTCACCATCTTAACAAATCTCTTTGCTGCCTTCTGCACAGTCAATAGCAGCAACTCTTTTGGCCTCGCCCCTTTTAGTTTCCATTCACTGGTC
TTCATCGTGATGCTCAATTTCTATACCTCAATCATAGGAATTGTTCTATGGCAAGTGTTTCCAATGGTGGCAAGAGGATTTCACCTAATGGCATTTCTAT
GCGCCTTGCTTTCACTTACCATTCTGTTTGGTGCAGTTCTTCCAATCCAACTCAATGGCGCGCCCTGGATTTGTATGGCACTTGTGGTGCTCGTAGTTTT
TGTCCTGCTTCTCCACAACCTCTCCCCTCATCCTTAG
AA sequence
>Potri.004G111232.1 pacid=42794406 polypeptide=Potri.004G111232.1.p locus=Potri.004G111232 ID=Potri.004G111232.1.v4.1 annot-version=v4.1
MAKHTENESCYSVENPSSLIVEMGELSLESPNFEMMNDDEAATNIVEAAATSSKKGIFERWANALVMVPFTILTNLFAAFCTVNSSNSFGLAPFSFHSLV
FIVMLNFYTSIIGIVLWQVFPMVARGFHLMAFLCALLSLTILFGAVLPIQLNGAPWICMALVVLVVFVLLLHNLSPHP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G111232
[exp]
0 1
Potri.007G106900
[exp]
7.87 0.9907
AT3G54320 AP2_ERF ATWRI1, ASML1, ... WRINKLED 1, WRINKLED, ACTIVATO... Potri.017G078600
[exp]
11.13 0.9899
AT1G61110 NAC ANAC025 NAC domain containing protein ... Potri.004G049500
[exp]
13.85 0.9706
AT1G02335 GL22 germin-like protein subfamily ... Potri.010G240700
[exp]
14.59 0.9883 Pt-GER2.16
Potri.005G059400
[exp]
20.85 0.9865
AT1G03050 ENTH/ANTH/VHS superfamily prot... Potri.010G103200
[exp]
21.21 0.9127
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.004G191450
[exp]
22.97 0.9864
AT1G09310 Protein of unknown function, D... Potri.004G056700
[exp]
25.29 0.9860
AT1G11310 PMR2, ATMLO2, M... POWDERY MILDEW RESISTANT 2, MI... Potri.005G254300
[exp]
27.71 0.9857
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.008G212923
[exp]
28.28 0.9857

Potri.004G111232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.