Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02330 1078 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 521 / 3e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 516 / 5e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 513 / 2e-166 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 488 / 2e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G57430 481 / 2e-156 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 481 / 3e-156 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 473 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 466 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 465 / 2e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 595 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 550 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 548 / 2e-180 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 549 / 4e-180 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 495 / 6e-162 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 488 / 3e-159 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 485 / 4e-157 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 483 / 7e-156 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 476 / 4e-155 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032091 [exp] 1091 / 0 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 1045 / 0 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 552 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 548 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 539 / 5e-177 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 537 / 1e-175 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038431 [exp] 483 / 5e-158 AT4G20770 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013578 [exp] 484 / 2e-155 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014707 [exp] 481 / 2e-155 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 476 / 9e-154 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G111300.1 pacid=42796517 polypeptide=Potri.004G111300.1.p locus=Potri.004G111300 ID=Potri.004G111300.1.v4.1 annot-version=v4.1 ATGGCAGTCCACACCTCTCAATTATGGCTGTTAACAAGGCTTTTCTTCTCTTACCACGCAATACCTTTATACAAGAAAATCCCACCTATACCCACCAACA CTTTCTCCACACTCGCTCAAAACCAAACCCAACCACCCGCCAAGATCAGAACTTTTTCTCATATTTACCAAGAATGCTCGAAACAGAACTCTCTGAATCC TGGCAAACAAGCACATGCTCGAATGATTTTTTGTGGGTTTGAACCTACAACCTTTGTGTCCAATTGTTTGATGCAAATGTACATAAAATGTTTGTATTTG GACTATGCGTGCAAGGTGTTTGATAAGATGTATCTGAGGGATGTGGTTTCTTATAACTCCATTATTTCTGGATATGCTAGTTGTGGGGAAATGGATATTG CGAGAAAGTTTTTTTATGAGATGCCGGAGAGAGACGTAGTGTCGTGGAATTCAGTGATTTCCGGGTTTTTGCAGAATGGTGAGTGTCGGAAGTCGATTGA TGTTTTTTTGGAGATGGGGAGGTGCGGTGTGGGTTTTGACCGAGCGAGTCTTGCTGTTGTTTTGAAAGCTTGTGGGGCTTTGGAAGAGTGTGATATGGGA GTTCAGGTTCATGGACTTGTGGTGAAGTTTGGATTTGATTGTGATGTGGTCACTGGGAGTGCTTTGCTTGGTATGTATGCAAAGTGTAAGAGATTAGATG ATTCACTTTCAGTTTTTAGTGAACTTCCTGAGAAGAATTGGGTTTCTTGGAGTGCAATGATTGCTGGTTGTGTTCAAAATGATCGGAATGTTGAGGGTTT AGAGTTGTTCAAGGAGATGCAAGGGGTGGGAGTTGGGGTTAGTCAATCTATCTATGCTAGTCTTTTCAGATCCTGTGCAGCATTGTCAGCATTAAGATTG GGTAAAGAGTTGCATAGCCATGCTTTAAAGAGTGCTTTTGGATCTGACATCATTGTAGGAACTGCCACTTTGGATATGTATGCAAAATGTGGCAGGATGG CAGATGCTCAAAAGGTACTTAGCTCAATGCCAAAATGTAGTTTGCAATCGTATAATGCCATTATCGTTGGGTATGCCAGAAGTGATCGAGGCTTTCAAGC TTTGAAGTCATTTCAGCTTCTGTTGAAGACTGGCCTTGGTTTTGATGAAATAACTCTATCCGGAGCATTAAATGCTTGTGCATCCATCAGAGGAGATTTG GAGGGGCGTCAAGTTCATGGATTAGCGGTTAAGAGTATTTCTATGTCAAATATTTGTGTTGCGAATGCCATCCTTGACATGTATGGTAAATGCAAGGCTC TTGCTGAAGCTTCTGATCTGTTTGATATGATGGAAAGGAGAGACGCTGTCTCTTGGAATGCAATTATCGCAGCATGTGAGCAGAATGGAAACGAAGAGGA AACACTTGCCCATTTTGCATCAATGATTCACTCAAGAATGGAACCTGATGACTTCACTTATGGCAGTGTCTTGAAAGCTTGTGCTGGTCGACAAGCTTTA AACACCGGCATGGAGATCCATACTAGAATTATAAAATCTGGAATGGGTTTTGACTCATTTGTGGGAGCTGCCCTTGTTGATATGTACTGCAAGTGTGGAA TGATAGAAAAAGCGGATAAAATCCATGACAGAACAGAACAAAAGACAATGGTTTCTTGGAATGCTATTATTTCTGGATTCTCTCTGCTACAACAAAGTGA GGATGCTCACAAATTTTTTTCAAGAATGTTGGAAATGGGTGTAAACCCAGACAACTTCACTTATGCAGCAGTTCTTGATACTTGTGCAAATTTAGCTACT GTTGGTCTTGGGAAGCAAATACATGCTCAAATTATCAAGCAGGAACTGCAATCAGATGTGTACATATGCAGCACTCTTGTTGATATGTACTCAAAGTGTG GAAACATGCAAGATTCTCAGCTGATGTTTGAGAAAGCACCTAACAGGGATTTTGTAACGTGGAACGCCATGCTTTGTGGTTATGCTCATCATGGTCTTGG AGAAGAGGCATTAAAACTTTTTGAGCGTATGCAACTTGTGAATGTAAAGCCAAATCATGCAACTTTTGTTTCTGTCCTCAGAGCGTGCGCACACATGGGG CTTGTTGATAAAGGCTTGCATTACTTTGATGTCATGCTGAGTGAGTACGGTTTAGATCCTCAATCTGAGCACTATTCATGTATGGTTGACATACTAGGGA GATCAGGGCGCATTGATGAGGCATTGAATCTTGTTCAAAAGATGCCTTTCGAAGCTGATGCTGTTATCTGGAGAAATCTGCTTAGTGTTTGCAAGATCCA TGGGAATGTAGAGGTTGCAGAAAAAGCAACTAGGGCTCTTTTGCAATTGGATCCGCAAGACTCTTCTGCTTGCGTTCTTCTATCAAACATTTATGCTGAT GCAGGAATGTGGGGTAATGTTTCGGAGATGAGAAAGATGATGAGGCATAATAAGCTGAAAAAGGAACCAGGTTGTAGCTGGATTGAATTGAAAGATGAAG TGCATGCATTTCTTGTTGGAGACAAAGGCCATCCAAGAGACGAAGAGATATATGAGAAACTTGGAGTGCTAATCGGAGAGATGCAGTCAGTTGGATATAT ACCTGATTGTGATGTTTTGCTTGATGAGGAAGTAGAAGAACCTGCGCAGCTAGAAGAGCTAAGAACCTGCGCATACAATAGTTTAACATGTTGA
AA sequence Show only first row Show all	>Potri.004G111300.1 pacid=42796517 polypeptide=Potri.004G111300.1.p locus=Potri.004G111300 ID=Potri.004G111300.1.v4.1 annot-version=v4.1 MAVHTSQLWLLTRLFFSYHAIPLYKKIPPIPTNTFSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYL DYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMG VQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRL GKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDL EGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQAL NTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLAT VGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFERMQLVNVKPNHATFVSVLRACAHMG LVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYAD AGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDVLLDEEVEEPAQLEELRTCAYNSLTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	0	1
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	9.05	0.8528
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.014G119000 [exp]	10.95	0.8315
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	11.66	0.8451
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	13.07	0.8448
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	17.43	0.8374
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	19.33	0.7951	Pt-ATGLDH.1
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.007G104700 [exp]	20.19	0.7860
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	22.58	0.8335
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	25.45	0.8203
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	26.32	0.8160

Compare expression of checked genes

Potri.004G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.