Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38840 342 / 1e-106 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 93 / 4e-20 FHA SMAD/FHA domain-containing protein (.1) AT3G20550 73 / 8e-14 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT1G34355 60 / 5e-09 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003100 [exp] 93 / 7e-20 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 90 / 1e-18 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.001G420400 [exp] 72 / 4e-13 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 68 / 4e-12 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.013G114700 [exp] 67 / 3e-11 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005098 [exp] 712 / 0 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 676 / 0 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 92 / 2e-19 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 89 / 2e-18 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10004278 [exp] 74 / 7e-14 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10019235 [exp] 67 / 1e-11 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10006070 [exp] 58 / 2e-08 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10009434 [exp] 56 / 2e-07 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10008411 [exp] 46 / 4e-05 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1) Lus10001966 [exp] 43 / 0.0004 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.004G111500.1 pacid=42795346 polypeptide=Potri.004G111500.1.p locus=Potri.004G111500 ID=Potri.004G111500.1.v4.1 annot-version=v4.1 ATGACATCCACCACCATGGGCCCTCCTCCTCCAAGAAACCCCAATCCCACCACCTCAACCGAAGCTGCCTCCATCACAGAACCCGAATCCGAACCCGAAT CTAAAACTTCAGTTGTCGACGAACCACAGAAAATCTCCTCAACAACAACAGCTGCAAAACCCTCCATGGCCCCGCCACCTCCCACAAACCCTATTCCCAC CCCACCAGAAACTTCTACAGAGCAAGAGAAAATAAAATCAAAGGATCCGTCAGTGCCGTACACAATTCCTGAATGGAGTGGGCCACCTTGCCATAAATTC TCCCTCGAGATTCTCAAAGATGGCTCCATTATCGACCAATTCGAAGTTTGTGAGAAAGGGGCTTACATGTTTGGCCGTGTGGAGCTCTGCGATTTCATTC TCGAGCACCCTACCATCTCTCGCTTCCATGCCGTTCTCCAGTTCAAAAGAAATGGAGATGCGTATCTTTATGATCTTGGCAGCACTCATGGCACCTTTGT TAACAAGAGTCAGGTGGAGAAGGGTGTTTATGTGGCCTTACATGTTGGTGATGTTATTCGATTTGGACATTCATCTCGATTGTATATTTTTCAAGGACCA CCTGACTTGATGCCACCGGAAGCTGACAGGAAAATTCGTAGAAATGCTAAGATCCGGCAAGAGATGCAAGATCAGGAAGCCTCACTTCAACGAGCAAGGC TGGAAGCATCTCTTGCTGATGGTATCTCATGGGGCATGGGAGAAGATGCTATTCAAGAAGTTGAGGATGATTGTGATGAAGTAACATGGCAAACCTACAA AGGACAGCTTACAGAGAAGCAGGAGAAAACCCGTGATAAAGTGATAAAACGAACAGAAAAGATTGCTCATATGAAGAAGGAAATAGATGCCATTCGTGCT AAAGACATTGCACAAGGTGGATTAACACAAGGTCAGCAAACTCAGATTGCACGCAATGAACAAAGAATGACACAGATAATGGAAGAACTGGAAAACTTGG AAGAGACTCTTAATGAAAGTATCCGGGAAAGTATTGGGGCACGTTCTGGAAGGATATCTCGTGGTAAAGGAAAAGGAACAGCAGAAGATGGTGAGGATTT TTCAAGTGATGATGATGAATTCTATGACCGTACAAAGAAACCATCAGTGCAAAAAGCTGGTGAAAATCTATCGGTTGAAACTGCCGATACCCTTCTTGAC AAGAGAGATGCTATCATGAAACAAATGGAAGACAAAAAAGAAGTGCTTTTGATCGAGAAGAATAAAATGGCACCAGAAACTGCAGTTGAGAACGGAGCTG GAGATGCACTTGATACCTACATGTCAGGGTTATCGTCTCAGCTAGTTCTGGATAAAACCATGCAACTCGAAAAGGAACTATCCTCTCTGCAATCTGAACT AGACAGGACCTTGTTCCTATTAAAGATTGCTGACCCATCAGGAGATGCTGCTCGGAAAAGGGATTCAAAAGTGCAGGTTATGAAACCTGACAAAGCAGAG GTGCCTGTTTCTGCCACCAAAAGCCAACCACCCACAGAACCAAAGAAAAGTAGTGCATTGGGAAAACCGACCAATGTCTCCATGCAGAAACAGAAAGCTG AAGATGCTGTGGTTGCTGAAATGGTATCGAATGATGCAGCAGAAACTGACAAAAATGTCATTGATGCACCTGATGGTAAGCCTACTGTTTATACTGCTGT AAAACCCCAATGGCTAGGTGCCATAGACAAAAGGAAAATGAAGGAGACCCAACAAGAAGAGGTGCTGGTCATGGATGAGTCTGATCAGTTTGTGGATTAT AAAGATAGACAGAAAATCCTGAGTAGTGTTGATGGTGCAGAGGTTAACGTGGATTCAGAGATTGAAAGTGCTGCTCCTGGTCTGATAATAAGGAAACGGA AGGGAGCTGAGGGACCTGGAGCTAATGATAATGAAGCTCCTGAACAGTTGACATCATCATCTGTGGGAGCAGAGCTCTTGGCAGAAGATGCTGTTGCACT GTTATTGAAACATAAAAGAGGATACCATGCAGAAGATGAAGAAGGAAATCATCAAAGCCAAGAGATATCAGGCACAAATCAACGTGGCAAGGAAAAGAAA AGACCGAAAAGAGTGCTGGGCCCTGAGAAACCCTCATTTCTCAATAGCAACCCAGATTATGAAACCTGGGTGCCACCTGAAGGGCAATCAGGTGATGGAC GAACCTCTCTAAATGATCGTTTTGGATACTGA
AA sequence Show only first row Show all	>Potri.004G111500.1 pacid=42795346 polypeptide=Potri.004G111500.1.p locus=Potri.004G111500 ID=Potri.004G111500.1.v4.1 annot-version=v4.1 MTSTTMGPPPPRNPNPTTSTEAASITEPESEPESKTSVVDEPQKISSTTTAAKPSMAPPPPTNPIPTPPETSTEQEKIKSKDPSVPYTIPEWSGPPCHKF SLEILKDGSIIDQFEVCEKGAYMFGRVELCDFILEHPTISRFHAVLQFKRNGDAYLYDLGSTHGTFVNKSQVEKGVYVALHVGDVIRFGHSSRLYIFQGP PDLMPPEADRKIRRNAKIRQEMQDQEASLQRARLEASLADGISWGMGEDAIQEVEDDCDEVTWQTYKGQLTEKQEKTRDKVIKRTEKIAHMKKEIDAIRA KDIAQGGLTQGQQTQIARNEQRMTQIMEELENLEETLNESIRESIGARSGRISRGKGKGTAEDGEDFSSDDDEFYDRTKKPSVQKAGENLSVETADTLLD KRDAIMKQMEDKKEVLLIEKNKMAPETAVENGAGDALDTYMSGLSSQLVLDKTMQLEKELSSLQSELDRTLFLLKIADPSGDAARKRDSKVQVMKPDKAE VPVSATKSQPPTEPKKSSALGKPTNVSMQKQKAEDAVVAEMVSNDAAETDKNVIDAPDGKPTVYTAVKPQWLGAIDKRKMKETQQEEVLVMDESDQFVDY KDRQKILSSVDGAEVNVDSEIESAAPGLIIRKRKGAEGPGANDNEAPEQLTSSSVGAELLAEDAVALLLKHKRGYHAEDEEGNHQSQEISGTNQRGKEKK RPKRVLGPEKPSFLNSNPDYETWVPPEGQSGDGRTSLNDRFGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	0	1
AT4G01290			unknown protein		Potri.002G163000 [exp]	1.41	0.9086
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	1.73	0.9160
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	8.00	0.8817	PAFA901
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	8.12	0.8960
AT1G15780			unknown protein		Potri.003G012400 [exp]	8.94	0.8917
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	9.79	0.8878
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	12.68	0.8693
AT5G66540			unknown protein		Potri.012G082600 [exp]	14.00	0.8670
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	14.49	0.8877
AT3G13990			Kinase-related protein of unkn...		Potri.003G063300 [exp]	14.69	0.8675

Compare expression of checked genes

Potri.004G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.