Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1326 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1244 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1154 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G105801 [exp] 1700 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1330 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1326 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1188 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1175 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005097 [exp] 1368 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1354 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1323 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1319 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1237 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1208 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1112 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 675 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 415 / 2e-137 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019207 [exp] 45 / 0.0001 AT1G68990 73 / 1e-14 male gametophyte defective 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [poplar] [flax] RNA_pol DNA-dependent RNA polymerase PF14700 [poplar] [flax] RPOL_N DNA-directed RNA polymerase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G111600.1 pacid=42796294 polypeptide=Potri.004G111600.1.p locus=Potri.004G111600 ID=Potri.004G111600.1.v4.1 annot-version=v4.1 ATGTCCAGTGCCAACCCCCATATATTCTCTACCAAAAAAATTGATCCTTTGATTGCTTTTGATAAGAAACCCTCAATTCTATCCCTAATCAATTCAAAAC CATCCACAGTTATGTGGAGAAACGTTGCAAAACAAGCCATTTTGAAACCCCAATCAAAGTCTCTCAATTTCCCTTCATTTCCAAAAACTCACAGCTTTTT AGGAGCCCCTCAAGAACCCATCTTTTTTGAGAAATCCAAGTTCCATTCAGTTAATAACTCAAGTCCACAGCTGTGTTTTCGCCGAATTGGCGAAATATCA ACCCATAAGGATTATATGGGAAAACCTAGTTTTGGTTTTTTGAGAAATGGTGATAGTAGTAATGGGAATCTGTGTAGTGGGTTGTGTCCAAGAGGATATG TGAGTGTAGCTGAGGCAGTGTCATCAACAGACGTTGAAGATAATGTGGTTGTTGATGAGGAATTGCAAGAATTGCTGCAAGACACGAGGAAAGAAGAGGA GAAAGAGAAGGACTTTAGGAGGAGAAGGAGGCTACATGCTAACCGTGGAATGGGGTCAGGGAAGTATAAGGCCTTAAGGAGAAGGCAAGTGAAGATTGAG GCTGAAGCATGGGAACAGGCAGCGAAAGAATATAAGGAACTTCTAAAGGATATGTGTGAGCATAAGTTGGCTCCTAATTTGCCATATATGAAGGGTTTGT TTCTTGGTTGGTTTGAGCCTTTGAGAGATGCAATTGCGAAAGAGCAGGAGTCGATTAGAAGAGGGAAGACCAGACCGGATTATTCTCCGTATTTTGATCT GTTGCCAGCTGATATGATGTCTGTTATTACTATGCATAAGCTCACAGCAATGGTGATGATAGGTGGGGAACATGGATGTGCAAGAGTTGTGGCTGCTGCT TGTATGATTGGTGATGCAATTGAGCAGGAGATTAGGATACACAATTTCTTGGAGAAAACAAGGAAGAAAAAGGAAAACGCTGATAATAGCAAGAATAGTG TAGAAGGTGAATCCCCTGCTGTCATGAATGAAGAAGAGAAGCTAAGAAAAAAGGTTACTGATTTGATTAAAAAACAAAAGCTGCCAGCAGTGAGGAAGAT TGTGAAGGGACACGATGATTCAAAATCATGGAGCACGGATGCTAAGGCCAAGGTCGGCAGCCGTCTAATTGAATTGCTGTTACAAACAGCTTATATACAG CCTCCTCCTGATCAGTTAGCTGATAGTCCACCTGATCTTCGACCTGCATTTGTACACACGTTCAGAACTGTGTCATATGAAAATAAGAAGACTTCCAGAA AATATGGTGTTATTCAATGTGACTCGCTAGTCCTCAAAGGCCTTGAGCAAACTGATAGGCACATAGTGATTCCTTATATGCCAATGTTGGTGCCACCGCT TCGATGGAGAGGTTATGATAAAGGTGCACACCTGTTCTTACCATCCTATGTCATGCGGATACATGGTGCTAAACAGCAACGTGAAGCAGTTAAGAGGACA CCTAAGAAGCAGCTACAGCTAGTTTTTGAGGCCCTGGATACATTAGGAAATACCAAATGGAGGGTAAATAAGAGGGTACTTAGTGTTGTTGATAGGATAT GGAATAATGGAGGTCGTCTTGCTGATTTGGTAGACCGCAGTGATGTTCCTTTACCTGAGAAGCCGGAAACAGAAGATGAAGCACTGCTAAAGAAGTGGAA GTGGAAAGTCAAAAGTGTGAAAAAAGAGAATAGGGAAAGACATTCACGCCGTTGCGACACAGAACTTAAAATTGCTGTAGCACGGAAGATGAAAAATGAA GAAGGTTTCTATTATCCACACAATCTTGACTTTCGTGGCCGTGCCTACCCCATGCACCCATATTTAAACCATCTCGGCTCAGATCTATGCCGGGGTATTT TGGAGTTTGCAGAGGGACGTCCTCTTGGAAAGTCAGGCTTACGCTGGCTGAAGATACACCTTGCAAATCTGTTTGCTTGTGGTGTAGACAAGTTATCCCA TGAGGGACGAATAGCTTTTACTGAGAATCACCTTGATGATATATTTGATTCTGCGGACAAACCACTTGAAGGAAAGCGTTGGTGGTTGCACGCAGAAGAT CCGTTTCAGTGCTTGGCTGTGTGCATTAACCTCACTGAAGCTTTGAGAAGCTCCTCTCCAGAAACATGCCTTTCACATATTCCTATTCATCAGGATGGTT CCTGCAATGGTCTGCAACACTATGCTGCACTTGGAAGAGACAAGTTGGGAGCAGCTGCTGTTAATCTAGTTGCTGGAGAGAAGCCCACAGATGTCTACTC AGGAATAGCTGCTAGAGTACTTGACATCATGCGGAGTGATGCACAGGAAGATCCAGAAGTTTTTCCTGACGCTTTGCGTGCAAGAAGATTAATCAGTCAG GTGGATAGGAAATTGGTGAAGCAGACAGTGATGACATCTGTGTATGGTGTGACTTACATTGGTGCTAGAGACCAAATTGAAAGGAGGTTAAAGGAACGTG GTCTCACAGACAATTCAGAGATCTTCGGTTGTTCTTGCTATGCTGCAAAGGTGACCTTAACTGCCTTAGGAGAGATGTTTGAAGCTGCACGAAGTATCAT GAACTGGCTTGGGGAATGTGCAAAGATTATTGCATCTGAAAATGAGCCAGTGCGATGGACAACTCCACTAGGACTTCCTGTTGTACAGCCTTACCGTAAA TTAGGGAAGCATGTTATCAAAACCTCCCTGCAGTTTTTAACACTACAAAAGGAAACTGACAAGGTTATGGTCAAACGACAGAGAACAGCTTTCCCACCAA ATTTTGTTCATTCCCTTGATGGTTCTCATATGATGATGACTGCAGTTGCCTGCAAAAGGGCAGGCTTAAAATTTGCAGGAGTTCACGATTCATATTGGAC GCATGCATGTGATGTGGATGAAATGAACAGGATACTGAGGGAAAAGTTTGTTGAACTCTATGAAACACCTATATTAAAAAATTTGTTGGAGAGCTTCCAA AAGTCCTTTCCTACACTGTCTTTTCCGCCTTTGCCTGAATGGGGAGACTTTGAGTTGAGGCAAGTGTTGGAATCACCTTATTTCTTCAACTGA
AA sequence Show only first row Show all	>Potri.004G111600.1 pacid=42796294 polypeptide=Potri.004G111600.1.p locus=Potri.004G111600 ID=Potri.004G111600.1.v4.1 annot-version=v4.1 MSSANPHIFSTKKIDPLIAFDKKPSILSLINSKPSTVMWRNVAKQAILKPQSKSLNFPSFPKTHSFLGAPQEPIFFEKSKFHSVNNSSPQLCFRRIGEIS THKDYMGKPSFGFLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNVVVDEELQELLQDTRKEEEKEKDFRRRRRLHANRGMGSGKYKALRRRQVKIE AEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRDAIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAA CMIGDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMNEEEKLRKKVTDLIKKQKLPAVRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQ PPPDQLADSPPDLRPAFVHTFRTVSYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRT PKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNNGGRLADLVDRSDVPLPEKPETEDEALLKKWKWKVKSVKKENRERHSRRCDTELKIAVARKMKNE EGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFACGVDKLSHEGRIAFTENHLDDIFDSADKPLEGKRWWLHAED PFQCLAVCINLTEALRSSSPETCLSHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPTDVYSGIAARVLDIMRSDAQEDPEVFPDALRARRLISQ VDRKLVKQTVMTSVYGVTYIGARDQIERRLKERGLTDNSEIFGCSCYAAKVTLTALGEMFEAARSIMNWLGECAKIIASENEPVRWTTPLGLPVVQPYRK LGKHVIKTSLQFLTLQKETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLKFAGVHDSYWTHACDVDEMNRILREKFVELYETPILKNLLESFQ KSFPTLSFPPLPEWGDFELRQVLESPYFFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	0	1
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.011G001100 [exp]	2.44	0.9029
AT1G09820			Pentatricopeptide repeat (PPR-...		Potri.005G014500 [exp]	3.00	0.8962
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	3.00	0.9093
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	5.65	0.8617
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	5.74	0.8588
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	10.95	0.8881
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.001G350400 [exp]	13.22	0.8800
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G066700 [exp]	13.41	0.8478
AT1G24290			AAA-type ATPase family protein...		Potri.011G023800 [exp]	14.69	0.8314
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	18.24	0.8616

Compare expression of checked genes

Potri.004G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.