Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 493 / 3e-173 Translation initiation factor IF2/IF5 (.1) AT1G36730 455 / 2e-158 Translation initiation factor IF2/IF5 (.1) AT5G20920 58 / 3e-09 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 662 / 0 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 594 / 0 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 57 / 5e-09 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 57 / 5e-09 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004057 [exp] 556 / 0 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10002283 [exp] 555 / 0 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 460 / 4e-161 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 288 / 4e-97 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 207 / 9e-64 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 55 / 5e-08 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01873 [poplar] [flax] eIF-5_eIF-2B Domain found in IF2B/IF5 CL0020 [poplar] [flax] TPR PF02020 [poplar] [flax] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Potri.004G112200.1 pacid=42795904 polypeptide=Potri.004G112200.1.p locus=Potri.004G112200 ID=Potri.004G112200.1.v4.1 annot-version=v4.1 ATGGCGTTGCAGAATATTGGTGCTGCAAACAGTGATGATGCCTTCTACAGGTACAAGATGCCTAAGATGATTACCAAAATTGAGGGCCGAGGAAATGGCA TCAAGACAAACATTGTCAACATGGTTGATATTGCAAAGGCTTTGGCAAGGCCAGCTTCTTACACTACGAAGTACTTTGGTTGTGAGCTTGGTGCACAATC CAAATTTGATGAGAAAACAGGGACTTCCCATGTGAATGGCTCTCATGACACTGCCAAACTTGCAGGCCTTCTTGAGAACTTTATCAAGAAATATGTCCAG TGTTATGGCTGTGGAAACCCTGAGACTGAGGTAATCATCACCAAAAGCCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCGGATGTTGATA TGAGGGACAAGCTCACCACTTTCATTGTGAAGAATCCACCAGAAACAAAGAAGGGATCAAAGGACAAGAAGGCAATGAGGAGGGCTGAGAAGGAGCGACT GAAGGAAGGTGAAGCTGCCGATGAGGAGCAGAAGAAACTGAAGAATGGTAAGAAGAAGGGATCTTCTACAAAGGATGGCCATGCAAAAGCTAGCTCTATT AAGAAGAAAGCAAACAGCTCTGATGAGGAACGCGGGTCACCAACTCATAGCCAGGTTGATGAGAAGGAAGAGGCTGATGATGAAGATGATGTCCAGTGGC AAACTGATACATCTCTGGAGGCTGCTCGCCAACGCATTCAGGAGCAGTTGAGTGCTGCGACAGCTGATATGGTCATGCTCGCCGCAGATGAGACAGAGAA GAATTCAAAGACAGCCAGCAAAGAAAATGGCAGTCCTCGAGAGGAGGAACCAAAAGCTGGTTGCGGGAATTCAAGTGCATATGAAACTCTCGTGGAGGAG GTGAAGGCAAACCTGAAGAAGGGAGTATCTGCAAGCAAAATACAGTCTGTTCTCGGTTCACTTGATGGGTCTGCTCAGGAAAAGATGAATGGTCTGTTTG AGGCATTGTTTGAGGGTGTTGAGAAAGGATTTGCGAAGGAGGTTGGCAAGAAGAAGAAGTATCTGGCTGCCGCTGTTGCTCAGGATGAGGGATCACAGTT GCTTCTGCTCCGAGCAATCGGGGCATTCTGTGGGAAGTCGAGCTCAAGTGCACTGAAGGAAGTGGCTCTTGTCATGAAAGACCTGTATGATGCTGATGTC CTGGAGGAAGAGTACATCGTGCAGTGGTATCAGGAAGGGCTAGAGGGACCAAGCAAGGATTCTCAGATTTGGAAGAATGCTAAGCCCTTCATTGAATGGC TTCAGAATGCTGAGTCTGAGTCGGAGGAAGAATGA
AA sequence Show only first row Show all	>Potri.004G112200.1 pacid=42795904 polypeptide=Potri.004G112200.1.p locus=Potri.004G112200 ID=Potri.004G112200.1.v4.1 annot-version=v4.1 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGSHDTAKLAGLLENFIKKYVQ CYGCGNPETEVIITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPETKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKNGKKKGSSTKDGHAKASSI KKKANSSDEERGSPTHSQVDEKEEADDEDDVQWQTDTSLEAARQRIQEQLSAATADMVMLAADETEKNSKTASKENGSPREEEPKAGCGNSSAYETLVEE VKANLKKGVSASKIQSVLGSLDGSAQEKMNGLFEALFEGVEKGFAKEVGKKKKYLAAAVAQDEGSQLLLLRAIGAFCGKSSSSALKEVALVMKDLYDADV LEEEYIVQWYQEGLEGPSKDSQIWKNAKPFIEWLQNAESESEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77840			Translation initiation factor ...		Potri.004G112200 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.003G045700 [exp]	9.27	0.5800	Pt-ATRLI1.2
AT5G07670			RNI-like superfamily protein (...		Potri.003G107900 [exp]	39.11	0.5262
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	62.32	0.5066
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	112.78	0.4688
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	115.99	0.4607
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	260.19	0.4033

Compare expression of checked genes

Potri.004G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.