Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 510 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 410 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 405 / 9e-141 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 392 / 7e-136 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 365 / 2e-125 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G13610 356 / 1e-121 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 341 / 6e-117 alpha/beta-Hydrolases superfamily protein (.1) AT2G24320 334 / 5e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 330 / 2e-112 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 315 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102500 [exp] 602 / 0 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 481 / 2e-170 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 474 / 1e-167 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 441 / 1e-154 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 420 / 2e-146 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 417 / 2e-145 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 381 / 1e-131 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 374 / 9e-129 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 340 / 2e-116 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035148 [exp] 527 / 0 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 527 / 0 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 402 / 4e-139 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 386 / 1e-132 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 380 / 8e-131 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 383 / 7e-125 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017617 [exp] 360 / 3e-123 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 351 / 9e-120 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040038 [exp] 337 / 4e-115 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000544 [exp] 340 / 8e-115 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.004G112300.1 pacid=42796627 polypeptide=Potri.004G112300.1.p locus=Potri.004G112300 ID=Potri.004G112300.1.v4.1 annot-version=v4.1 ATGGGGGCGGTCACATCCACGATGGCGGCGAAGTTTGCGTTTTTTCCTCCGAGTCCTCCGTCTTACGAGCTGGAGGAGGAGGACGAGGAGGCGGAGGGCG GTGCGAAGAAGTTAAGGATGGCGGCGGCGGCGGGTGTACATAATAGTAATAGAGAATACGTTGACGTGTTGAAATTGGAAACGAAGAGAGGGAATCATGT GGTGGCGGTGTATTTTAAGAACCCTGCGGCTTCATTGACAGTGCTTTACTCGCATGGAAATGCAGCTGATCTGGGGCAGATGTATGATTTGTTTTGTGAG CTCAGTTTGCATCTCCGTGTTAACTTGATGGGGTATGATTATAGTGGGTATGGACAGTCAACTGGAAAGCCAACTGAGCAGAATACATATGTTGACATAG AAGCTGCTTATAGGTGTCTTGAAGAGAAATATGGGGTTAAAGAAGAAGATGTTATCTTATACGGGCAATCAGTTGGAAGTGGACCCACTTTAGATTTGGC AACACGGTTACCAAAATTGAGGGCTGTGGTTCTTCACAGTCCAATTGCATCCGGCCTTCGAGTAATCTATCCAGTGAAGAGAACATACTGGTTCGACATA TATAAGAACATTGATAAAATACCTTTCATCAATTGTCCAGTACTGGTGATTCATGGAACTGATGATGATGTTGTGAGTTGGTCCCATGGTAAGCAGCTTT GGGAGCGATGTAAAGAGAAGTATGAACCATTATGGGTGAAGGGAGGGAATCATTGTGACTTGGAGCTTTACCCGCAATACATAAAGCATCTCAAGAAGTT CATATCAGCCATTGAGAAATCATCACGTCTGAGAAATGTATCTGGGTCCATTGTGGATCAAACAGAGGATCCTCGAAAGAGCACAGATTTTAGGGAGGTT GCCAGATCTAGTATAGATCAGAGAGAGACGTCTAGACTAAGTGCTGATAAAAAAGAAAAGCCTAGGCTAAGCACAGACCGCAGAGAGAAGTCAAGGTCCA GCACTGATAGGAGAGAGAGATCAAGAAAAAGCGTGGATCACCCTGAGAGAGAGAGCAATGGTTCAGACCAGCATGAGAAAGCTAGGAACAGCATTGATCG CTTTGGGGACATGATAAGATCTGTTGGATTGTGCAATATCGATTGCTTCAAGCCCACGGCGACAGCCATCTGA
AA sequence Show only first row Show all	>Potri.004G112300.1 pacid=42796627 polypeptide=Potri.004G112300.1.p locus=Potri.004G112300 ID=Potri.004G112300.1.v4.1 annot-version=v4.1 MGAVTSTMAAKFAFFPPSPPSYELEEEDEEAEGGAKKLRMAAAAGVHNSNREYVDVLKLETKRGNHVVAVYFKNPAASLTVLYSHGNAADLGQMYDLFCE LSLHLRVNLMGYDYSGYGQSTGKPTEQNTYVDIEAAYRCLEEKYGVKEEDVILYGQSVGSGPTLDLATRLPKLRAVVLHSPIASGLRVIYPVKRTYWFDI YKNIDKIPFINCPVLVIHGTDDDVVSWSHGKQLWERCKEKYEPLWVKGGNHCDLELYPQYIKHLKKFISAIEKSSRLRNVSGSIVDQTEDPRKSTDFREV ARSSIDQRETSRLSADKKEKPRLSTDRREKSRSSTDRRERSRKSVDHPERESNGSDQHEKARNSIDRFGDMIRSVGLCNIDCFKPTATAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.004G112300 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	3.00	0.8361
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	7.07	0.8326
AT3G10120			unknown protein		Potri.006G213100 [exp]	15.42	0.7635
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	26.66	0.7847
					Potri.019G025866 [exp]	27.12	0.7774
					Potri.011G073666 [exp]	34.46	0.7725
					Potri.011G160250 [exp]	34.62	0.7656
					Potri.011G162912 [exp]	37.62	0.7717
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	38.47	0.7349
AT5G62960			unknown protein		Potri.015G078200 [exp]	39.54	0.7204

Compare expression of checked genes

Potri.004G112300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.