Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15710 753 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 127 / 3e-32 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT1G27340 117 / 1e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 100 / 6e-23 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G76920 74 / 3e-14 F-box family protein (.1) AT5G43190 73 / 1e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G33160 71 / 5e-13 F-box family protein (.1) AT3G57580 64 / 8e-11 F-box and associated interaction domains-containing protein (.1) AT5G49610 57 / 8e-09 F-box family protein (.1) AT3G17500 57 / 2e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102300 [exp] 810 / 0 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 129 / 8e-33 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G171300 [exp] 129 / 1e-32 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 128 / 2e-32 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G074100 [exp] 126 / 7e-32 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G118700 [exp] 112 / 3e-27 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G016200 [exp] 111 / 6e-27 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G093200 [exp] 103 / 4e-24 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G166500 [exp] 102 / 8e-24 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035147 [exp] 747 / 0 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 745 / 0 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 134 / 1e-34 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 131 / 2e-33 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007740 [exp] 115 / 6e-28 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10010610 [exp] 112 / 1e-27 AT5G43190 327 / 2e-110 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 114 / 2e-27 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10018690 [exp] 113 / 2e-27 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007855 [exp] 108 / 1e-25 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10003029 [exp] 107 / 2e-25 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G112400.1 pacid=42796634 polypeptide=Potri.004G112400.1.p locus=Potri.004G112400 ID=Potri.004G112400.1.v4.1 annot-version=v4.1 ATGGATGGTAGTGCTGGGGAGTCATCTGAATCTGGGTCTATTGTATCTAGTTCACAATCCTCGAAAAATGGGGCGCATGATATTGATGATGGTTGTCCTA GGCAAGTGTCACCTGTTAGAATTGATGGGTCGAGGAATACGAGTCCCATGGGTCGCGTTGGATTGAGAAATACTAGTCCTTCCAGACAAAAGGTGATTAA AACCAAACCACGTGGTTTAGATGAGGAAACGATTGCTACATTTGGTAAGGTTGTCCACCCTGATATTCAAATGGAGGATAGCATATGGGCAATGTTGCCT GAGGATCTATTGAATGAGATTTTAGTAAGGGTTCCTCCATTTATGATATTCCGTCTTCGTTCTGTTTGTAAACGATGGAATTCAATTCTCCAAGATAGTA GTTTTCTTAAATTTCACTCCCAAGTTCCATCTCATGGGCCTTGCCTTTTGACATTTTGGAAGAACCCGCACACCCCACAATGCTCAGTTTTCAGCTTGCC CTTGAAAGCTTGGTATAGAATTCCGTTCACATTTTTGCCACAGTGGGCATTTTGGTTGGTTGGTTCTTCAGGGGGCCTTGTTTGTTTTTCTGGACTTGAT GGGCTAACTTTCAAAACTTTAGTTTGTAATCCGCTCACACAAACTTGGAGGACATTGCCTAGCATGCATTATAATCAGCAAAGGCAGTTAATAATGGTTG TGGATAGAATAGACCGTTCATTCAAAGTGATAGCCACCGGTGATATTTATGGGGATAAGTCATTGCCTACTGAAGTGTATGATTCAAAGCTTGACAGATG GTCACTCCACCAGATAATGCCCGCAGTCAACCTTTGCTCCTCAAAGATGGCTTATTGTGACTCCAGACTGTACCTGGAAGCCCTTTCACCGCTTGGTTTG ATGATGTATAGGCTTGACACAGGTTACTGGGAACACATTCCAGCAAAATTTCCCAGGTCCTTGTTGGATGGATATCTGGTAGCTGGCACTCAGAAGCGTC TGTTTTTAGTTGGAAGGATTGGCCTTTATAGTACTCTTCAGAGTATGAGAATTTGGGAATTAGATCATGCTAAGATTACATGGGTGGAGATTAGTAGGAT GCCACCAAAGTATTTTCGAGCTCTGTTGAGGTTATCAGCTGAAAGATTCGAGTGCTTTGGACAGGATAACTTGATTTGCTTTACATCTTGGAACCAAGGA AAAGGCCTTCTATATGATGTGGATAAGAAGGTCTGGTCTTGGATTGCTGGATGTGCGCTTCAGTCATACAACTGCCAGGTCTGTTTCTATGAGCCAAGAT TTGATGACTACATCTATTGA
AA sequence Show only first row Show all	>Potri.004G112400.1 pacid=42796634 polypeptide=Potri.004G112400.1.p locus=Potri.004G112400 ID=Potri.004G112400.1.v4.1 annot-version=v4.1 MDGSAGESSESGSIVSSSQSSKNGAHDIDDGCPRQVSPVRIDGSRNTSPMGRVGLRNTSPSRQKVIKTKPRGLDEETIATFGKVVHPDIQMEDSIWAMLP EDLLNEILVRVPPFMIFRLRSVCKRWNSILQDSSFLKFHSQVPSHGPCLLTFWKNPHTPQCSVFSLPLKAWYRIPFTFLPQWAFWLVGSSGGLVCFSGLD GLTFKTLVCNPLTQTWRTLPSMHYNQQRQLIMVVDRIDRSFKVIATGDIYGDKSLPTEVYDSKLDRWSLHQIMPAVNLCSSKMAYCDSRLYLEALSPLGL MMYRLDTGYWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHAKITWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSWNQG KGLLYDVDKKVWSWIAGCALQSYNCQVCFYEPRFDDYIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15710			Galactose oxidase/kelch repeat...		Potri.004G112400 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052500 [exp]	2.44	0.6654
					Potri.001G178950 [exp]	8.60	0.6841
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	8.66	0.6965
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.002G226300 [exp]	13.19	0.6798
AT1G08170			Histone superfamily protein (....		Potri.001G212200 [exp]	20.97	0.6696
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.011G148600 [exp]	22.49	0.6402
					Potri.001G067200 [exp]	31.08	0.6162
AT3G54190			Transducin/WD40 repeat-like su...		Potri.013G091700 [exp]	42.21	0.5595
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.005G003000 [exp]	42.81	0.5731
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.011G166601 [exp]	44.27	0.6340

Compare expression of checked genes

Potri.004G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.