Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15720 248 / 8e-80 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 232 / 4e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 222 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G03980 219 / 2e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 218 / 3e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 218 / 8e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 217 / 2e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 212 / 2e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102100 [exp] 572 / 0 AT5G15720 264 / 5e-86 GDSL-motif lipase 7 (.1) Potri.010G137100 [exp] 241 / 6e-77 AT1G71691 221 / 3e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 227 / 1e-71 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 214 / 2e-66 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 210 / 8e-65 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 207 / 6e-64 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 207 / 7e-64 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 205 / 5e-63 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008000 [exp] 202 / 6e-62 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 218 / 6e-68 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 211 / 7e-65 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 210 / 1e-64 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 209 / 1e-64 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 207 / 1e-63 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 206 / 5e-63 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10005414 [exp] 198 / 4e-60 AT5G45670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 197 / 1e-59 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 196 / 4e-59 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 193 / 2e-58 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G112700.1 pacid=42795155 polypeptide=Potri.004G112700.1.p locus=Potri.004G112700 ID=Potri.004G112700.1.v4.1 annot-version=v4.1 ATGGAGAATATTAAAGTGATGGGTTTTACACTATTCGTCTTCTCTGTTGGGCTCCTTCATTTCATCTCTCTGGTCTGTGGTGCACCACTTGCACCAGCAC TGTACGTCTTCGGCGATTCGTTGTTCGATAGCGGCAATAACAATCTCTTGCCAACCGTTTCGAAGGCTAATTTCAAGCCTTATGGTGTTGATTTTGTCAG AGGAGATACAGGAAGATTCAGTAATGGTAGATTGGTTCCAGATTTTATAGCTGAATTTCTGGGGCTGCCATATCCTCCGCCGTCAATAAGCATCCGGATA TCCACACCGGTCACTGGTTTGAATTACGCGTCAGCATCTTGTGGCATTCTTCCTGAAACTGGACAGTTTTTGGGAAAATGCTTGAGTTTGGATGATCAGA TTGATTTATTTCAGCATACAGTTAAGTCAAGCTTGCCAGAGCACTTCAAAGGTAGGCCAAATGAGCAATCGGAGCACTTGTCGAAGTCTATTTTTGTAGT TTGCATTGGCAGTAATGACTATATGAGTAACTACCTGAAGCCCAAGACATCTGACACAAGCAAACATTACTCTCCTCAAGCATTTGCTCAACACCTTCTG GATAAACTATCAGCACAATTCCGGAGGCTACACAGTTTAGGAGCCAGGAAAGTTGTGATGTATGAGATTGGACCCATTGGTTGCATCCCCTCAATGACAA GGAAAAATAAACATAATGGAAAATGTGTTGAAGAATCAAACCAGCTTGTTGCTTACTTTAACGATAATCTTCTTGGAATGCTTCAGAATCTGACATCCAC TCTGCCCAACTCCATTTTTGTTCGTGGTCATGCGCATTGGCTAGGCTATGATGCAATTATCAATCCTTCTAAATATGGATTACTTGACACAAGCAACCCA TGTTGCAAAACTTGGGCCAATGGGACCTCTGCTTGCATTCCTGAGCTAAAACCGTGCCCTAATCCAAACCAGCACTACTTTTTTGATGGTTATCACCTTA CTGAAACTGTATATTCAGTCTTAGCAGGGGCCTGTATCAATGATAGATCGGTTTGCTCTCCTACTCTAAGAGAACTTGTACAAGTGTAA
AA sequence Show only first row Show all	>Potri.004G112700.1 pacid=42795155 polypeptide=Potri.004G112700.1.p locus=Potri.004G112700 ID=Potri.004G112700.1.v4.1 annot-version=v4.1 MENIKVMGFTLFVFSVGLLHFISLVCGAPLAPALYVFGDSLFDSGNNNLLPTVSKANFKPYGVDFVRGDTGRFSNGRLVPDFIAEFLGLPYPPPSISIRI STPVTGLNYASASCGILPETGQFLGKCLSLDDQIDLFQHTVKSSLPEHFKGRPNEQSEHLSKSIFVVCIGSNDYMSNYLKPKTSDTSKHYSPQAFAQHLL DKLSAQFRRLHSLGARKVVMYEIGPIGCIPSMTRKNKHNGKCVEESNQLVAYFNDNLLGMLQNLTSTLPNSIFVRGHAHWLGYDAIINPSKYGLLDTSNP CCKTWANGTSACIPELKPCPNPNQHYFFDGYHLTETVYSVLAGACINDRSVCSPTLRELVQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15720		GLIP7	GDSL-motif lipase 7 (.1)		Potri.004G112700 [exp]	0	1
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	2.00	0.8928
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	8.48	0.8585
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	8.48	0.8835
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	10.39	0.8773
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	11.83	0.8757
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	12.24	0.8737
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	14.00	0.8652	Pt-GASA5.2
					Potri.001G073166 [exp]	15.87	0.8599
AT1G21695			hydroxyproline-rich glycoprote...		Potri.002G080200 [exp]	20.39	0.8408
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	20.49	0.8371	Pt-LTP1.2

Compare expression of checked genes

Potri.004G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.