Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NEMDH.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47520 583 / 0 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT2G22780 411 / 4e-143 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT1G53240 410 / 1e-142 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 406 / 4e-141 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT5G09660 392 / 6e-136 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G53910 101 / 6e-26 malate dehydrogenase-related (.1) AT4G17260 57 / 7e-09 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102000 [exp] 746 / 0 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 735 / 0 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.011G096300 [exp] 415 / 1e-144 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.007G009100 [exp] 412 / 2e-143 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G376500 [exp] 410 / 9e-143 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.009G081600 [exp] 409 / 4e-142 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 406 / 6e-141 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.004G054200 [exp] 403 / 5e-140 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G152000 [exp] 240 / 3e-77 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034458 [exp] 652 / 0 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 650 / 0 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 607 / 0 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 594 / 0 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 412 / 3e-143 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 403 / 8e-140 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10039642 [exp] 402 / 4e-139 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 386 / 7e-133 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 377 / 2e-127 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10013680 [exp] 363 / 1e-124 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G112800.1 pacid=42794879 polypeptide=Potri.004G112800.1.p locus=Potri.004G112800 ID=Potri.004G112800.1.v4.1 annot-version=v4.1 ATGGCGGCAACGTCAGCAGCTACCTTTTCAGCTGGATCTACTGTCGCCTTCGGCACCAAAGCAAGCCAACTCCCACAATCAAAACCTTCAGCTGTAAGAT TCAAGTCCCAGAAATCACTTGCAACCTTCAGTGGTCTCAAGGCAGCTACGTTTGTGAAGTGTGAGTCAGAGTCATCTTTCTTAGGCAAGGAAAGTAGCGC AGCCCTTCGAGGCTCTGTTGTACCAAAAGCTCAAAAATCAAGCCAAAAGTCACAGTATCACCTAAACCCACAGGCATCTTACAAAGTGGCAATTCTTGGA GCTGCTGGAGGAATAGGCCAGCCCCTAGCACTTCTAGTTAAGATGTCTCCATTGGTTTCAGCCCTGCACCTCTATGATATAGCAAATGTCAAGGGAGTTG CTGCTGACATCAGTCACTGTAATACCCCTGCGCAAGTTTTGGATTTCACAGGGGCTTCTGAGTTACCCAATTCTCTGAAGGGTGTCGATGTTGTTGTCAT ACCTGCTGGGATTCCAAGGAAGCCTGGTATGACCCGGGATGACCTCTTCAACATCAATGCCAGCATAGTGAAGAACTTGGTTGAGGCTGTGGCTGATAAC TGCCCTGATGCTTTCATCCACATCATCAGCAATCCAGTAAACTCTACAGTGCCAATTGCAGCTGAAGTTTTGAAGAAGAAGGGTGTGTATGATCCAAAGA AGCTCTTTGGCGTTACTACACTTGATGTCGTGAGGGCAAATACATTTGTTGCTCAGAAGAAAAACCTCAAGCTTATTGACGTGGATGTGCCAGTGGTGGG AGGGCATGCAGGGATAACTATTCTTCCCCTTCTATCAAAGACAAAACCCTCTGTTAGTTTCACTGATGAGGAAGTGCAGGAGCTAACTGTAAGGATCCAG AATGCAGGGACAGAAGTTGTGCAGGCAAAGGCAGGGGCAGGGTCTGCAACCCTGTCAATGGCATACGCCGCAGCCAGATTTGTCGAATCTTCTCTTCGTG CTTTGGATGGGGATGCTGATGTCTATGAGTGCTCGTTTGTGCAATCTGATCTTACTGAGCTTCCATTCTTTGCTTCTAGGGTAAAACTTGGAAGGAAGGG GGTTGAAGCTCTCATTTCATCTGACCTCCAAGGGCTGACTACGTATGAACAGGAGGCACTGGAAGCTCTCAAGCCTGAACTGAAGGCCAGCATTGAGAAG GGTATTGCATCTGCTCAGAAGCAACCAGTTGGTGCATAG
AA sequence Show only first row Show all	>Potri.004G112800.1 pacid=42794879 polypeptide=Potri.004G112800.1.p locus=Potri.004G112800 ID=Potri.004G112800.1.v4.1 annot-version=v4.1 MAATSAATFSAGSTVAFGTKASQLPQSKPSAVRFKSQKSLATFSGLKAATFVKCESESSFLGKESSAALRGSVVPKAQKSSQKSQYHLNPQASYKVAILG AAGGIGQPLALLVKMSPLVSALHLYDIANVKGVAADISHCNTPAQVLDFTGASELPNSLKGVDVVVIPAGIPRKPGMTRDDLFNINASIVKNLVEAVADN CPDAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVSFTDEEVQELTVRIQ NAGTEVVQAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTELPFFASRVKLGRKGVEALISSDLQGLTTYEQEALEALKPELKASIEK GIASAQKQPVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.004G112800 [exp]	0	1	Pt-NEMDH.2
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	1.73	0.9489
AT3G48070			RING/U-box superfamily protein...		Potri.015G069400 [exp]	3.00	0.9395
AT3G53630			unknown protein		Potri.006G082400 [exp]	4.00	0.9331
					Potri.004G178101 [exp]	6.92	0.9193
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	7.74	0.9453
AT1G12170			F-box family protein (.1)		Potri.012G014700 [exp]	8.71	0.9118
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	9.16	0.8946
AT4G00530			unknown protein		Potri.014G082800 [exp]	10.48	0.8862
AT3G18420			Protein prenylyltransferase su...		Potri.010G098500 [exp]	12.36	0.9275
AT1G21600		PTAC6	plastid transcriptionally acti...		Potri.002G078900 [exp]	13.85	0.9310

Compare expression of checked genes

Potri.004G112800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.