Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 186 / 2e-56 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 175 / 2e-52 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT5G08130 165 / 1e-47 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G30980 62 / 7e-11 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT4G16430 59 / 2e-09 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36930 58 / 2e-09 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 58 / 3e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G09530 58 / 4e-09 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G24260 57 / 4e-09 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 57 / 4e-09 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101700 [exp] 523 / 0 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.012G065000 [exp] 228 / 5e-70 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G048000 [exp] 228 / 6e-70 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G137600 [exp] 218 / 9e-69 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.008G112000 [exp] 215 / 9e-68 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.006G186600 [exp] 61 / 4e-10 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.002G124400 [exp] 59 / 1e-09 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 59 / 1e-09 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G109500 [exp] 59 / 2e-09 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034358 [exp] 290 / 1e-96 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 268 / 2e-86 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10026684 [exp] 189 / 1e-57 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 168 / 1e-49 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 169 / 5e-48 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 160 / 1e-44 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10024811 [exp] 65 / 1e-11 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 61 / 9e-11 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036286 [exp] 61 / 3e-10 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10021846 [exp] 59 / 2e-09 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G112900.1 pacid=42796035 polypeptide=Potri.004G112900.1.p locus=Potri.004G112900 ID=Potri.004G112900.1.v4.1 annot-version=v4.1 ATGGTGAAATCAGCGAAGTCTCAGCTCGACGAAGAAGATGAACCTGAAGACTACGACTCGTCGTCCTACAAAGGGGAAGTACTGAAACCAGAGAGTAAAA GCAGCGAGCCGAAGGCGAATGCGAACCGGTCCAAGCATTCTGAGACAGAGCAGCGTAGAAGGAGCAAGATTAACGAGAGGTTCCAGGCTTTGAGAAATCT TATTCCTCAAAATGATCAGAAAAGAGATAAGGCTTCGTTCTTGTTAGAGGTTATAGAGTACATTCAGTTTTTACAAGAAAAGTTACAAGTGTATGAGGGA TCATATGAAGGTTGGAGTCAGGAGCCAGCTAAATTATTGCCATGGAAGATTGATCGTGCTTCTGCCGAAAGCCTACTCGATCATACACAAGTTATGAAAA ATGGTTCTGCTCATGAGAATAGTGTCATGCTTGCAAATGTACATAACTCAATAGAATCTGACATGGGCACTGCTGCAATGTACAAAGCATTGGATCATCC CCATGGGCCCACCAACCCAGCAATTCCATTTGATGTGCAGACACCATCGAATGTATTTGCTGCTGTTGGGAGGGGTGGTTTGCCTACACAGTCTTTGCAG GAATCTGTTTCTGACGTTGAGAACATGGCTTACCAGCTTCAATCCCAGCTGTTGCACGGTAGACCATGCGCTACTGAGTGTTCTACTCCAAACAATACAC TGAATGGACAGGAGGACTTGGCGAGTGACAGTCTATCAGTTAATATCTCAAATGCCTATTCTCAACAGATATTGAATACTCTGACCCAAGCACTACAATC CTCTGGTGTGGATCTAGCACAGACAAGCATCGGAGTGCAAATTGATGTTAGCAAACGAGAAAATAGTACAACTGCTGTGGCACCCAGTTCAAAGGTAAAC CAGTATCTAAGCAATCAACTACTCGTGCAAGATGGAGTTGGGAGCAGTGCAGAAAACTCAGAACAAGCTCATAAGAGGCCAAGAAGAGAAAAATGCTAG
AA sequence Show only first row Show all	>Potri.004G112900.1 pacid=42796035 polypeptide=Potri.004G112900.1.p locus=Potri.004G112900 ID=Potri.004G112900.1.v4.1 annot-version=v4.1 MVKSAKSQLDEEDEPEDYDSSSYKGEVLKPESKSSEPKANANRSKHSETEQRRRSKINERFQALRNLIPQNDQKRDKASFLLEVIEYIQFLQEKLQVYEG SYEGWSQEPAKLLPWKIDRASAESLLDHTQVMKNGSAHENSVMLANVHNSIESDMGTAAMYKALDHPHGPTNPAIPFDVQTPSNVFAAVGRGGLPTQSLQ ESVSDVENMAYQLQSQLLHGRPCATECSTPNNTLNGQEDLASDSLSVNISNAYSQQILNTLTQALQSSGVDLAQTSIGVQIDVSKRENSTTAVAPSSKVN QYLSNQLLVQDGVGSSAENSEQAHKRPRREKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.004G112900 [exp]	0	1
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Potri.010G201600 [exp]	2.00	0.8066
AT2G39170			unknown protein		Potri.008G035000 [exp]	2.00	0.7906
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.008G196500 [exp]	4.69	0.7393	CLA1.1
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	5.29	0.7728
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	5.91	0.7728
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	10.81	0.7479
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116700 [exp]	11.40	0.6782
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	11.48	0.7699
AT4G22160			unknown protein		Potri.004G004100 [exp]	12.72	0.7759
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	24.18	0.6896

Compare expression of checked genes

Potri.004G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.