Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30300 886 / 0 O-fucosyltransferase family protein (.1) AT3G03810 572 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT4G38390 171 / 1e-45 RHS17 root hair specific 17 (.1) AT1G22460 170 / 2e-45 O-fucosyltransferase family protein (.1) AT1G04910 166 / 4e-44 O-fucosyltransferase family protein (.1) AT5G64600 166 / 6e-44 O-fucosyltransferase family protein (.1) AT1G11990 163 / 1e-42 O-fucosyltransferase family protein (.1) AT1G20550 161 / 3e-42 O-fucosyltransferase family protein (.1) AT4G16650 159 / 1e-41 O-fucosyltransferase family protein (.1) AT1G76270 155 / 5e-40 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101600 [exp] 1087 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.013G056200 [exp] 598 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 592 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 173 / 1e-46 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 171 / 5e-46 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 167 / 2e-44 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 167 / 2e-44 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 165 / 3e-43 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 164 / 3e-43 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034356 [exp] 960 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10005094 [exp] 959 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10010654 [exp] 550 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10013612 [exp] 543 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10037830 [exp] 172 / 4e-46 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 168 / 9e-45 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 169 / 1e-44 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 167 / 1e-44 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 166 / 2e-43 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 163 / 1e-42 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G113200.1 pacid=42796416 polypeptide=Potri.004G113200.1.p locus=Potri.004G113200 ID=Potri.004G113200.1.v4.1 annot-version=v4.1 ATGAAAGGAGAACGGAAGATGATGATAAAGTCCAAGATGAAGTGGGTTGGTTTGGTCGGGCTAGTTCTATCGGCTTTTTCCCTGTTTGTACATTTCTTGC TTGCTAGATTCACCGAGGAAGGCATTACTGATTACCAGTCTTCAGTCACGATCTTTTCTTGGAGACCCGTCTTTGAAAATCCTGACTTTGCCAAAAACAG TCCTTCGTACAGAAGACTATGGGGTCCAGTAAGGCGCCTTGAATCTTTACATCCAGATGCAAATCCCAGAGGATATTATACTGATCCCAGATCAGAATCA AGTGGGTATGTCTTTGTTAGGATACAAGGTGGATTCCATGAAATAAGAAATTCGATATGTGATGTGGTTGTGATTTCTCGGCTTCTTAATGCTACTTTAG TTATTCCTGAGATCCAATCAACCACTAGGAGCAAAGGAATCAGCTCCCAGTTCAAGAGTTTTGCGTACCTTTATAATGAGGATAACTTCATGGCAGCTTT AGTGAAAGATGTTAAAGTTGTGAAAACCCTTCCGCAAAATCTTAAAGACGCCAGGAGGCTAAAAAAGATCCCATCATTCAGAGTGCCTAATTCAGCTTCG CCATATTTTTACTTGCATCATGTTCTCCCAGTACTTAATAAGCATGTGGTGGTCGAACTAGTTGTTTCCGATGGGGGGTGCTTGCAGGCTATCCTTCCAC CCCAACTCGAAGAATATCAAAGGCTGAGGTGTAGAGTTGCTTTTCATGCCTTACGGTTTAGGCAAGAGGTCCAGGAACTAGCAACTAAAATGTTGCAGAG GTTACGGGCTCCTGGCCAACCATTTATAGCCTTTGATCCTGGTTTGACAAGAGATGCCTTAGCATACTATGGCTGTGCTGAGCTATTCCAGGATGTGCAC AATGAACTTATTCAGCACAAACGAGCTTGGATGAAGAAACGTGGGATTGTTAAGGGGAAGCTTTCTGTAAATTCAGCTGAACAACGTCTTAATGGTTCAT GTCCATTAATGCCAGAAGAGGTTGGCATTCTTCTACGTGCATATGGATATCCATGGGACACTATTTTATATGTCTCTGGGGGAGAAGTTTTTGGAGGCCA GCGGACACTGACTCCTCTTCATGCCATGTTTGAAAATATTGTTGATAGAACTTCTCTCAGTGCTGCGTGGGAGCTCAATAGAATTTATGGTCGTGAAGTG AACCTTGTTGACACTAAATTAAGGGCTCCACCTTCTGTAGTGCAAGAAAAAAAGCATGAAGTATGGAAAAATGAAGGCCCACGTCCCCGTCCACTTCCAC CCCCTCCAGCTAGGCCTAAATATCCATACAACATTGAAGGTTGGTGGGGTTGGGTGGCTGAGAGTGATAACGAGCCTGAGAGTACAGTAATGGAGTTAAG GACTAATGCCCATAAACTATTATGGGAAGCAATTGACTATTTAATTTGTGTAGAAGCTGATGTTTTCATCCCTGGATTCGATCGTGATGGGAAAGGACGT CCAAATTTCGCAAGCTTGGTAATGGGGCATAGGCTTTATCAATCAGCTGCATCTAAAACATTCCAGCCAAACAGAAAGGAAGTTGTAAAGCTTTTAGAAG AAAACCGTGAACACCTATACCAAGCAAATCATACCTGGCTGACATCAACACGCAGCCATTTTAGAAGAAGTTTAATTGATGGAGTAATAAGAGCATCCAC AGAATCAAAGCCATTGTCATTTCTCTCCCATCCAGTCCCAGAATGTTCTTGCTTGAGATCTGATCTTACCAAAAGATCATTGCATACTTCAAGCCCTTCT ACTTGGGCACCAGTGGAGGCTGCCCTAGGAGTTATGCATCACTGCCCTATGTGGATGGATAGTGGGATAAAAACAAAATTGAAGGAAAAAGAAATTGAAG AGGATCCTGATGAAGATATTTCCTCATCTTCTGGACTGTTTTTCAGGAATAGTGGTGGAAATCATGAGAGTGGAGGTGGGGAATTGATCAAAGAAGAGTC TCAACTAGATGATCAAGAAGAACTGGAGGGCGCAGACTGA
AA sequence Show only first row Show all	>Potri.004G113200.1 pacid=42796416 polypeptide=Potri.004G113200.1.p locus=Potri.004G113200 ID=Potri.004G113200.1.v4.1 annot-version=v4.1 MKGERKMMIKSKMKWVGLVGLVLSAFSLFVHFLLARFTEEGITDYQSSVTIFSWRPVFENPDFAKNSPSYRRLWGPVRRLESLHPDANPRGYYTDPRSES SGYVFVRIQGGFHEIRNSICDVVVISRLLNATLVIPEIQSTTRSKGISSQFKSFAYLYNEDNFMAALVKDVKVVKTLPQNLKDARRLKKIPSFRVPNSAS PYFYLHHVLPVLNKHVVVELVVSDGGCLQAILPPQLEEYQRLRCRVAFHALRFRQEVQELATKMLQRLRAPGQPFIAFDPGLTRDALAYYGCAELFQDVH NELIQHKRAWMKKRGIVKGKLSVNSAEQRLNGSCPLMPEEVGILLRAYGYPWDTILYVSGGEVFGGQRTLTPLHAMFENIVDRTSLSAAWELNRIYGREV NLVDTKLRAPPSVVQEKKHEVWKNEGPRPRPLPPPPARPKYPYNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAIDYLICVEADVFIPGFDRDGKGR PNFASLVMGHRLYQSAASKTFQPNRKEVVKLLEENREHLYQANHTWLTSTRSHFRRSLIDGVIRASTESKPLSFLSHPVPECSCLRSDLTKRSLHTSSPS TWAPVEAALGVMHHCPMWMDSGIKTKLKEKEIEEDPDEDISSSSGLFFRNSGGNHESGGGELIKEESQLDDQEELEGAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30300			O-fucosyltransferase family pr...		Potri.004G113200 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012700 [exp]	6.00	0.8136	Pt-FAD2.1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	9.79	0.8467
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.003G138800 [exp]	12.08	0.8203
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	19.82	0.8157
AT1G27370	SBP	SPL10	squamosa promoter binding prot...		Potri.014G057800 [exp]	21.33	0.8060
AT4G31980			unknown protein		Potri.013G146300 [exp]	30.16	0.8109
AT4G24790			AAA-type ATPase family protein...		Potri.015G088100 [exp]	31.74	0.7785
AT1G78170			unknown protein		Potri.002G096100 [exp]	31.74	0.8053
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	37.14	0.8047
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.007G043100 [exp]	37.30	0.7956

Compare expression of checked genes

Potri.004G113200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.