Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15730 534 / 0 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT5G54590 398 / 4e-135 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT3G19300 237 / 2e-70 Protein kinase superfamily protein (.1) AT1G49730 223 / 3e-65 Protein kinase superfamily protein (.1.2.3.4) AT2G37050 227 / 4e-65 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G52290 218 / 8e-65 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G79620 224 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 224 / 5e-64 Leucine-rich repeat protein kinase family protein (.1) AT2G28970 222 / 5e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G56890 224 / 1e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101400 [exp] 737 / 0 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 398 / 2e-135 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.011G131200 [exp] 382 / 4e-129 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.009G100400 [exp] 241 / 8e-72 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 239 / 2e-71 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.016G084900 [exp] 244 / 3e-71 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 242 / 1e-70 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.013G025700 [exp] 227 / 8e-69 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.004G232500 [exp] 233 / 2e-67 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008540 [exp] 592 / 0 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 589 / 0 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 391 / 1e-132 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 389 / 6e-132 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 244 / 6e-73 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 243 / 2e-72 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10021003 [exp] 224 / 2e-67 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 225 / 1e-66 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 219 / 2e-66 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10038172 [exp] 226 / 4e-65 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G113400.2 pacid=42794636 polypeptide=Potri.004G113400.2.p locus=Potri.004G113400 ID=Potri.004G113400.2.v4.1 annot-version=v4.1 ATGCTTTTGAGGTCTTCATTGAAAAATCAAGGACAGACTTATCAAACATGTGTGTTTTGCACGGACAGTGATCGGCAGTTTTATAAGCTCTGGAGGGAGG GAACCCATTTGATAGTTTTGGTGAAGAGGTATAGCTGTAGAAAATATGGGGCTGTTGGATATTTTCATGACTTGTTGCATCATGAGCCTGCTGAACTTCT CAACTCAAGATGTTTTCATTGTCTAAGTTTCAAAAGAGACCAGAGAATGGTTCATAAAGGTGATTTGGTTGTTATTGGAATCTCTGTTGGTTTGGCCCTT GGTATCTTGATCGCTTCACTCATATTTTTCGGCATATGGTGGTACAAGAAGCGTTCTAATCTCCGACAGTGCTCAAACGAGCGTATTCTTCCAACTCTTC CAATACGCATGAATGGCTTGGGGACAAGCAATGACTTTAGTGCATCCCTTGCAAGTTCTATTACCATCCGGGGATCAGAACACCCTCAGAAGAGCTCTCC GGTTTCTTCTTGGTGGAATCATCACAGTAAAGATCAGTTTGCTTCTGCATCAGGCATACTTAGATACTCTTACAAGGATATACAGAAAGCTACACAAAAA TTCACAACTGTTTTGGGACAAGGTTCGTTTGGTCCTGTATATAAAGCTGTCATGCCTACTGGAGAAGTATTAGCTGTAAAGGTTCTTGCTTCTAACTCAA AGCAGGGGGAAAAAGAGTTCCAAACAGAGATTTCTCTATTAGGAAGGCTGCATCACCGCAATCTTGTGAATTTGTTAGGATATTGTATAGATAAAGGAAG CCACATGTTGATCTATCAGTTCATGAGCAATGGAAGCCTAGCAAACCACCTTTACAATGATGAAGAGCGATTTTTGGGTTGGGAAGAAAGACTTCAAATT GCTCTTGATATTTCGCATGGAATTGAATATCTTCATGAAGGGGCAGTCCCACCTGTTATACATCGTGATTTGAAGTCAGCAAACATATTGCTGGACCAGT CAATGAGAGCTAAAGTTGCTGATTTTGGACTTTCAAATGAAGAGGTCTTCGATGAGCACACCTCTGGCTTGAAAGGTACATATGGCTACATAGATCCAGT GTACGTATCCACAAACAAGTTCACCGTGAAGAGTGACATCTACAGTTTTGGTGTTATCATCTTCGAACTTATTACAGCCATCCACCCACATCAAAATCTA ATGGAATATGTTAATCTTGCTGGTATGAGTCCAGATGGTGTTGATGAAATACTAGACAAGAAGCTGGTTGGAGAATGCAACATTGAAGAAGTGAGGGACC TAGCTGCCATTGCCCACAAGTGCCTGCAAAAATTCCAAAGGAAGCGACCTTCAATAGGAGAAGTTTCACAGGCTATATTGAAGATAAAACAAAGGCTCCT CGATAGGGAAATGTCTAAAGAATTTTCACGAGTTCTAAGCAGGATAGAGGATCAACAGATGGAGTTGAGTAGGATGGCCAGCATAAAAGATGGCGACTGA
AA sequence Show only first row Show all	>Potri.004G113400.2 pacid=42794636 polypeptide=Potri.004G113400.2.p locus=Potri.004G113400 ID=Potri.004G113400.2.v4.1 annot-version=v4.1 MLLRSSLKNQGQTYQTCVFCTDSDRQFYKLWREGTHLIVLVKRYSCRKYGAVGYFHDLLHHEPAELLNSRCFHCLSFKRDQRMVHKGDLVVIGISVGLAL GILIASLIFFGIWWYKKRSNLRQCSNERILPTLPIRMNGLGTSNDFSASLASSITIRGSEHPQKSSPVSSWWNHHSKDQFASASGILRYSYKDIQKATQK FTTVLGQGSFGPVYKAVMPTGEVLAVKVLASNSKQGEKEFQTEISLLGRLHHRNLVNLLGYCIDKGSHMLIYQFMSNGSLANHLYNDEERFLGWEERLQI ALDISHGIEYLHEGAVPPVIHRDLKSANILLDQSMRAKVADFGLSNEEVFDEHTSGLKGTYGYIDPVYVSTNKFTVKSDIYSFGVIIFELITAIHPHQNL MEYVNLAGMSPDGVDEILDKKLVGECNIEEVRDLAAIAHKCLQKFQRKRPSIGEVSQAILKIKQRLLDREMSKEFSRVLSRIEDQQMELSRMASIKDGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	0	1
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Potri.005G152100 [exp]	1.41	0.9059
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	3.31	0.9098
AT1G21380			Target of Myb protein 1 (.1)		Potri.002G075500 [exp]	4.00	0.8667
AT3G51580			unknown protein		Potri.019G058400 [exp]	4.24	0.8851
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	4.47	0.8629
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	8.66	0.8788
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	9.27	0.8332
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	9.79	0.8699
AT4G33890			unknown protein		Potri.009G090500 [exp]	11.31	0.8399
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005201 [exp]	12.36	0.8508

Compare expression of checked genes

Potri.004G113400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.