Plant FIBer expression Database

Potri.004G113700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05055 609 / 0 ATGTF2H2, GTF2H2 general transcription factor II H2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016248
[exp]
617 / 0 AT1G05055 632 / 0.0 general transcription factor II H2 (.1)
Lus10029294
[exp]
363 / 3e-124 AT1G05055 353 / 2e-120 general transcription factor II H2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0006 C1 PF07975 C1_4 TFIIH C1-like domain
CL0128 vWA-like PF13519 VWA_2 von Willebrand factor type A domain
Representative CDS sequence
>Potri.004G113700.1 pacid=42796183 polypeptide=Potri.004G113700.1.p locus=Potri.004G113700 ID=Potri.004G113700.1.v4.1 annot-version=v4.1
ATGACTAACAAAATTGCTGAAAAAAGAAGACAGCAAGAAGAAGATGATGAAGAAGATGGTGATCTCGACGGTTGGGGAGAGAGAAATTATTCTGATGAGA
GATCTTGGGAAGCTTTACAAGAGGATGAGTCTGGGCTCCTTCGTCCTTTGGATAACAAAGCGATGTACCATGCTCAGTATCGCCGTCGCCTTCGTTCTCT
TTCTACTGCTTCTAATTCCCAGCGTATTCAGAAAGGGCTCATTCGCTTTCTCTACGTTGTCCTAGATCTCTCAAGGGCTGCATCGGTGATGGATTTTCGA
CCAAGCAGAATGGCTGTGGTTGCGCAAAATGTTGAGGCGTTTATAAGGGAGTTTTTTGATCAGAATCCACTTAGTCAGATTGCTTTGGTTACTATAAAAG
ATGGGGTTGCTTATTCTTTAACGGAGCTTGGTGGGAGTCCTGAGTCTCATATTAAGGCTTTGATGGCTAAGCTGGAATGTTCAGGTGATTCGTCACTACA
GAATGCATTGGAGCTTGTTCATGAGTATCTTGATAAAATTCCATCATATGGTAATCGTGAAGTTCTCATCTTATATTCTGCCCTTACGACCTGTGATCCG
GGAGATATAATGGAGACAATCCAGAAATGCAAGAAGTCTAAAATGAGATGCTCAGTTATTGGCCTCTCTGCTGAAATGTTCATATGCAAGCATCTCTGCC
AAGAAACTGGTGGATTGTACTCTGTTGCTTTGGATGAGAGCCACTTTAAAGAGTTAATATTGGAGCATGCACCCCCTCCTCCGGCAATAGCAGAATTTGC
AATAGCTAACTTGATCAAGATGGGTTTCCCACAAAGAGCAGCAGAGGGTTCCATCTCGATATGTTCTTGTCATAAAGAATCGAAAGTTGGTGAGGGGTAT
ATTTGTCCAAGATGTAAAGCGCGTGTGTGTGAGCTTCCTACCGAATGCCGTATTTGTGGGTTGACACTTGTTTCTTCACCCCATTTAGCAAGGTCGTACC
ATCATCTCTTTCCCATAGCACCATTTGATGAGGTGAAACCATCACGTCAAAATGAACCACATCGTAGATCACAGAAAACTTGTTTTGGTTGCCAACAAAG
CCTTGTCAATCCTGGCAATAAACCCAGCCTTCAAGTTGCTTGTCCAAAATGCAAACAGTACTTTTGCCTTGACTGTGACATTTACATTCATGAGAGCCTG
CACAATTGCCCAGGTTGCGAGAGCCTTAGAGCTTCATAG
AA sequence
>Potri.004G113700.1 pacid=42796183 polypeptide=Potri.004G113700.1.p locus=Potri.004G113700 ID=Potri.004G113700.1.v4.1 annot-version=v4.1
MTNKIAEKRRQQEEDDEEDGDLDGWGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLIRFLYVVLDLSRAASVMDFR
PSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLTELGGSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDP
GDIMETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGY
ICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKCKQYFCLDCDIYIHESL
HNCPGCESLRAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05055 ATGTF2H2, GTF2H... general transcription factor I... Potri.004G113700
[exp]
0 1
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.001G253200
[exp]
4.00 0.8001
AT4G10070 KH domain-containing protein (... Potri.013G099800
[exp]
4.89 0.8376
AT2G34040 Apoptosis inhibitory protein 5... Potri.004G052300
[exp]
8.00 0.8160
AT3G32940 RNA-binding KH domain-containi... Potri.001G008700
[exp]
8.60 0.8285
AT2G42450 alpha/beta-Hydrolases superfam... Potri.005G222000
[exp]
14.00 0.8067
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Potri.001G169900
[exp]
17.74 0.8231
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.011G118800
[exp]
26.26 0.7962
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Potri.005G237500
[exp]
31.74 0.7826 Pt-XRN2.2
AT4G16280 FCA RNA binding;abscisic acid bind... Potri.010G147900
[exp]
32.24 0.8144
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Potri.006G280200
[exp]
32.31 0.8082

Potri.004G113700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.