Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15780 179 / 3e-52 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G29140 62 / 3e-11 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G13140 61 / 4e-10 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G08685 54 / 2e-08 SAH7 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 50 / 3e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G05500 50 / 6e-07 MOP10 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G47635 49 / 7e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G09925 49 / 1e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 47 / 3e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G26960 47 / 4e-06 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100600 [exp] 312 / 7e-104 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G326200 [exp] 72 / 8e-15 AT5G41050 158 / 9e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G068400 [exp] 72 / 1e-14 AT5G41050 172 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.003G167100 [exp] 68 / 2e-12 AT5G13140 180 / 2e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G060500 [exp] 67 / 2e-12 AT5G13140 185 / 3e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G005600 [exp] 57 / 3e-09 AT5G47635 120 / 8e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.004G168600 [exp] 58 / 5e-09 AT4G38770 164 / 6e-45 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) Potri.009G129900 [exp] 57 / 1e-08 AT4G38770 153 / 1e-42 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, proline-rich protein 4 (.1) Potri.006G119100 [exp] 53 / 4e-08 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034365 [exp] 153 / 8e-43 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10005086 [exp] 152 / 1e-42 AT5G15780 133 / 5e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10001895 [exp] 62 / 3e-11 AT1G29140 157 / 2e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10013908 [exp] 62 / 3e-10 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10012553 [exp] 58 / 3e-10 AT5G41050 168 / 3e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10035187 [exp] 58 / 7e-10 AT5G41050 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041541 [exp] 56 / 2e-09 AT5G41050 169 / 2e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041707 [exp] 54 / 1e-08 AT5G10130 150 / 9e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10026040 [exp] 54 / 2e-08 AT5G10130 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10014332 [exp] 54 / 2e-08 AT5G10130 154 / 2e-48 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Potri.004G114300.3 pacid=42795315 polypeptide=Potri.004G114300.3.p locus=Potri.004G114300 ID=Potri.004G114300.3.v4.1 annot-version=v4.1 ATGAGTGATCGTAGAGAGAGAAGAAGAATACTCATAATGCCTTGGTTTTTCATAATATTCCTTCTCGGTTTCACATTTAATAACCCCTCAGAAGCCAGCC ATGGAAAGAAACTTCCATCTGCAGTTGTCGTTGGCACTGTCTACTGTGACACATGTTTCCAAGAATATTTCTCAAGGAACAGTCACTTCATTTCAGGTGC ACATGTTGCTGTAGAATGCAAAGATGAGAAATCAAGACCAAGTTTCAGAGAAGAAGCGAAAACAGACGAGCATGGAGAATTCAAGGTTCATTTGCCTTTC TCAGTGAGCAAACACGTAAAGAAAATTAAGAGATGTTCAGTGGAGTTACTAAGTAGCAGCGAGCCTTATTGTGCTGTGGCATCCACAGCAACTTCATCAT CACTTCGTCTCAAGTCAAGAAAGGAAGGAACACATATATTTTCAGCTGGTTTTTTCACCTTCAAGCCTGAAAAAGAACCGTTCTTATGTAATCAAAAACC AAGTATAGAAAATCCCAGGGAATTCAGTTCCAAAGAAGCCTCTCTACCTTCTTTTGATAACCCAACATTTCCACCTCCACTTCAAGACCCGAAAACACCT GTTCTCCCTCCTCTTCCTCCGCTTCCAATATTGCCACCATTACCGCAACTCCCTCCTCTCCCACCTCTTCCAGGGCTACCTTTTCTTCCACCAATTCCAG CAAATACAGAAAATACCAAAACTACAGAATCTCTTAAGAGCACAACATTACCAGATGAGAAAGCGGTGCACCATCCTAATCAGTTTGGCTTTCCAACACC ACCACTTTTTCCACCAAACCCTTTTCAGCCACCTCCAATACTTCCTCCAATAATTCAGCCACCTCCACTATTTCCACCCATACTTCCTCCTAACCCACTT CAGCCTCCTCCAGTACCATCCCTTCCGTTGCCACCAGTACCATCCCTTCCGTTGCCACCAGTACCATCCCTTCCGTTGCCACCAGTACCATCCCTTCCGT TGCCACCAATACCTGGCCTAACTCCATCACCACCACCTCCCTTCTCACTTATTCCTCCTCTCCCTCTTCTCCCTCCTCTACCTCCTCTCATCCCTGGAAT CCCCCCAGCTTCTTCATCTTCACAGAAAACATCTCCTTGA
AA sequence Show only first row Show all	>Potri.004G114300.3 pacid=42795315 polypeptide=Potri.004G114300.3.p locus=Potri.004G114300 ID=Potri.004G114300.3.v4.1 annot-version=v4.1 MSDRRERRRILIMPWFFIIFLLGFTFNNPSEASHGKKLPSAVVVGTVYCDTCFQEYFSRNSHFISGAHVAVECKDEKSRPSFREEAKTDEHGEFKVHLPF SVSKHVKKIKRCSVELLSSSEPYCAVASTATSSSLRLKSRKEGTHIFSAGFFTFKPEKEPFLCNQKPSIENPREFSSKEASLPSFDNPTFPPPLQDPKTP VLPPLPPLPILPPLPQLPPLPPLPGLPFLPPIPANTENTKTTESLKSTTLPDEKAVHHPNQFGFPTPPLFPPNPFQPPPILPPIIQPPPLFPPILPPNPL QPPPVPSLPLPPVPSLPLPPVPSLPLPPVPSLPLPPIPGLTPSPPPPFSLIPPLPLLPPLPPLIPGIPPASSSSQKTSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15780			Pollen Ole e 1 allergen and ex...		Potri.004G114300 [exp]	0	1
AT5G56040			Leucine-rich receptor-like pro...		Potri.011G164800 [exp]	3.00	0.9033
					Potri.004G114450 [exp]	4.00	0.8914
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206500 [exp]	6.16	0.9090	CTS2.11
AT1G60590			Pectin lyase-like superfamily ...		Potri.008G189200 [exp]	7.93	0.8746
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Potri.012G131400 [exp]	17.40	0.8385
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.004G093800 [exp]	18.13	0.8935
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.014G083900 [exp]	21.00	0.8913	TAN1.1
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	21.33	0.8951
AT2G36430			Plant protein of unknown funct...		Potri.003G181600 [exp]	22.84	0.8948
AT2G26870		NPC2	non-specific phospholipase C2 ...		Potri.001G275500 [exp]	23.13	0.8367

Compare expression of checked genes

Potri.004G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.