Plant FIBer expression Database

Potri.004G114600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38880 1109 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G100300
[exp]
1343 / 0 AT5G38880 1120 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034366
[exp]
1135 / 0 AT5G38880 1121 / 0.0 unknown protein
Lus10005085
[exp]
1083 / 0 AT5G38880 1081 / 0.0 unknown protein
Lus10034622
[exp]
298 / 1e-91 AT5G38880 301 / 4e-93 unknown protein
Lus10035251
[exp]
273 / 2e-84 AT5G38880 256 / 3e-78 unknown protein
Lus10035250
[exp]
135 / 2e-37 AT5G38880 131 / 1e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14817 HAUS5 HAUS augmin-like complex subunit 5
Representative CDS sequence
>Potri.004G114600.2 pacid=42795233 polypeptide=Potri.004G114600.2.p locus=Potri.004G114600 ID=Potri.004G114600.2.v4.1 annot-version=v4.1
ATGCAGGGGTCATCGAGCGCAGTGGCGCAACCAGAGGCCATACTAGAATGGTTGCAAAAGGAGATGGGGTATAGGCCATTAGGACCGTACAGTGCAACCA
CAAGCAAATCTCAATTGCCTTCAATTGATGCGATGAGGAAAATTTGTCGTGGAAATATGATACCCATTTGGGGGTTTTTGGTAAAGAGAGTGAAATCGGA
GAAAACGGTGGAGAATATAAGGAAGAACATATTGGTACATGGTAGTGGTGGTGGTTTGGTAAATGCTGGGAAAGATGAGGGGAGAAGTAAAGGAGGGAGG
AGGAAGGAGAAGGTGGGCGGGGAGAGTGGGGGTGGTTCGAGCATGCCGGAGAGTAGGGAGGTGGCATTGCAAGAGAGGGAAATGGCGGCGAAGGAGGTTG
AGAGGTTGAGGAGTATTGTTAGAAGGCAGAGGAAGGATTTGAGGGCTAGAATGATTGAGGTTTCGAGGGAGGAGGCGGAGAGGAAGCGTATGATTGATGA
GCGTGCTAAGAATAGGCACAAACAGGTCATGCTGGAGGCTTACGACCAGCAATGTGATGAGGCAGCAAAAATATTTGCAGAGTATCATAAACGTCTTCAT
CAACATGTTGATCAAGCGAGGGATGCTCAAAGGTCAAGCATTGACAGTTCTATTGAAGAAGTTAGCAGTTTCAGTGCAAACAGTGAGAAGGAAGCTGTTT
ATTCAACCGTTAAGGGCACTAAATCTGCTGATGATGTCATTCTAATTGAAACAACTTGTGAAAGAAATATCCGGAAGGCATGTGAATCTCTTGCAGTTTA
TATGGTCGAGAGAATACGCAACTCTTTCCCTGCTTATGAAGGAAGTGGCATTCATTTGAATACTCAATCAGAAGCAGCCAAGTTGGCCATTGATTTTGAT
GGGGAAATACCTGATGATGTTAGAACTGTTATTGTGAATTGCCTGAAGAATCCTCCTCTCTTACTCCAGGCAATTACTGCATACACTTCACGACTGAAAA
CTTTGGTTTCTAGAGAAATTGAAAAAACTGATGTTAGAGCTGATGCAGAACTCTTAAGATACAAATACGAGAACAACAGGGTAATGGATGTTTCTTCTAC
TGACACAAACTCATCATTACACCACCAGCTTTATGGCTATGGGATGATTGCAACAGACATGACTTATAGAGGATCACAAAATCAGCTTCTTGAAAGACAG
AAAGCCCATGTTCAGCAATTTTTGGCCACTGAAGATGCACTCAATAAAGCTGCAGAAGCCAGGGACTTGTGTCAGAAGCTTTTAAAACGATTGCATGGAA
CTGGTGATGAAGTTTCTTCCAACTCAATTGTTAGTGGAGGCACAACACAGAACATGAGCAGTCTGAGGCAATTCGAGTTGGAGGTTTGGGCCAAGGAGAG
GGAAGCTGCTGGACTGAGGACAAGCTTGAATACATTGATGTCTGAAATACAACGCTTAAATAAATTGTGTGCAGAGAGGAAAGAGGCTGAAGATTCTTTG
AGAAAGAATTGGAAGAAGATTGAAGAGTTTGATGCACGCAGATCTGAACTTGAAGCTATATATACCACTTTACTGAAGTTTAACACGGAGGATGCGGCAG
CATTCTGGAAACGACAGCCATTGATTGCAAGGGAGTATGCATCAATTACTATCATCCCAGCATGTACAATTGTTGTGGAAATTGCAAACAGTGCCAAAGA
TCTTATTGATAAAGAAGTTAATGCCTTCTCGCAATGTCCTGATAATAGTCTTTACATGCTTCCTTCAACTTCACAGGCACTGTTGGAGTCCATGGGTTCT
AATGGATCTACAGGACCTGAAGTTGCTGCTGCTGCAGAGAAGAATGCTGCTTTATTGACAGCAAGAGCTGGTGCTAGGGATCCATCAGCAATCCCATCCA
TATGCCGTGTGTCTGCTGCCCTTCAGTATCCTGCTGGTTTGGAGGGTTCGGATGCTGGTTTAGCTTCAGTGTTAGAGTCCCTGGAGTTCTGTTTAAAACT
TCGTGGTTCTGAGGCTAGTGTGTTGGAGGACTTGGCAAAGGCAATCAATCTGGTCCATATTCGGCATGATCTTGTTGAAAGTGGTCATGCAGTGTTGAAC
CATGCATACCGATCTCAACAAGAATATGAAAGGACAACAAATTTTTGCTTGGACTTGGCCAATGAGCAAGAGAAAATTGTCGTGGAGAAATGGTTACCTG
AGCTTAAGACTACAGCTTTGAATGCCCAAAAGTGCTTGGAAGATTGCAAGTACGTGAGAGGTTTGCTTGATGATTGGTGGGAGCAACCAGCATCTACTGT
TGTTGACTGGGTTACAGTTGATGGACAAAATGTTGCTGCTTGGCATAATCACGTCAAGCAACTTCTTGCATTTTATGATAAAGAGCTCATGTGA
AA sequence
>Potri.004G114600.2 pacid=42795233 polypeptide=Potri.004G114600.2.p locus=Potri.004G114600 ID=Potri.004G114600.2.v4.1 annot-version=v4.1
MQGSSSAVAQPEAILEWLQKEMGYRPLGPYSATTSKSQLPSIDAMRKICRGNMIPIWGFLVKRVKSEKTVENIRKNILVHGSGGGLVNAGKDEGRSKGGR
RKEKVGGESGGGSSMPESREVALQEREMAAKEVERLRSIVRRQRKDLRARMIEVSREEAERKRMIDERAKNRHKQVMLEAYDQQCDEAAKIFAEYHKRLH
QHVDQARDAQRSSIDSSIEEVSSFSANSEKEAVYSTVKGTKSADDVILIETTCERNIRKACESLAVYMVERIRNSFPAYEGSGIHLNTQSEAAKLAIDFD
GEIPDDVRTVIVNCLKNPPLLLQAITAYTSRLKTLVSREIEKTDVRADAELLRYKYENNRVMDVSSTDTNSSLHHQLYGYGMIATDMTYRGSQNQLLERQ
KAHVQQFLATEDALNKAAEARDLCQKLLKRLHGTGDEVSSNSIVSGGTTQNMSSLRQFELEVWAKEREAAGLRTSLNTLMSEIQRLNKLCAERKEAEDSL
RKNWKKIEEFDARRSELEAIYTTLLKFNTEDAAAFWKRQPLIAREYASITIIPACTIVVEIANSAKDLIDKEVNAFSQCPDNSLYMLPSTSQALLESMGS
NGSTGPEVAAAAEKNAALLTARAGARDPSAIPSICRVSAALQYPAGLEGSDAGLASVLESLEFCLKLRGSEASVLEDLAKAINLVHIRHDLVESGHAVLN
HAYRSQQEYERTTNFCLDLANEQEKIVVEKWLPELKTTALNAQKCLEDCKYVRGLLDDWWEQPASTVVDWVTVDGQNVAAWHNHVKQLLAFYDKELM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G38880 unknown protein Potri.004G114600
[exp]
0 1
AT1G80260 EMB1427 embryo defective 1427, Spc97 /... Potri.016G000100
[exp]
2.00 0.7782
AT2G34680 AIR9 AUXIN-INDUCED IN ROOT CULTURES... Potri.001G357700
[exp]
2.00 0.8026
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.004G201900
[exp]
2.64 0.8072
AT3G06130 Heavy metal transport/detoxifi... Potri.013G025300
[exp]
15.29 0.7506
AT3G15470 Transducin/WD40 repeat-like su... Potri.001G403400
[exp]
16.12 0.7363
AT1G15890 Disease resistance protein (CC... Potri.001G172300
[exp]
17.54 0.7357
AT5G47020 unknown protein Potri.003G086200
[exp]
19.62 0.7413
AT4G38220 AQI aquaporin interactor, Peptidas... Potri.004G208100
[exp]
22.18 0.6764
AT5G38880 unknown protein Potri.017G100300
[exp]
26.05 0.7603
AT2G03890 UBDKGAMMA7, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Potri.017G101500
[exp]
26.64 0.7696

Potri.004G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.