Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02310 358 / 3e-126 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G15800 335 / 2e-117 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 271 / 7e-92 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 233 / 7e-77 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 190 / 5e-60 MADS AGL6 AGAMOUS-like 6 (.1) AT1G26310 162 / 5e-49 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT1G69120 161 / 6e-49 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 160 / 8e-49 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G61120 148 / 9e-44 MADS AGL13 AGAMOUS-like 13 (.1) AT4G09960 140 / 4e-41 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099700 [exp] 447 / 1e-161 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.001G058400 [exp] 297 / 2e-102 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169600 [exp] 295 / 2e-101 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.008G098400 [exp] 280 / 2e-95 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 212 / 9e-69 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 194 / 2e-61 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 184 / 4e-58 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 165 / 2e-50 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 165 / 3e-50 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005080 [exp] 398 / 5e-142 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 390 / 2e-138 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 285 / 5e-97 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 253 / 7e-85 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 251 / 1e-83 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 242 / 1e-81 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 242 / 2e-80 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10004638 [exp] 214 / 6e-70 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10017870 [exp] 201 / 1e-64 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 196 / 6e-63 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.004G115500.7 pacid=42795822 polypeptide=Potri.004G115500.7.p locus=Potri.004G115500 ID=Potri.004G115500.7.v4.1 annot-version=v4.1 ATGGGGAGAGGTAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGTTGTTGAAGAAAGCTTATG AGTTATCTGTGCTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTACGAGTTTTGTAGCACATCTAACATGCTCAAGACCCT GGAAAGGTATCAGAAGTGCAGCTATGGTGCAGAAGAAGTCAATAAACCAGCCAAGGAGCTCGAGAGCAGCTACAGGGAGTACTTGAAAGTGAAAGCAAGA TTTGAGGCCCTACAACGAACTCAGAGGAACCTTCTTGGAGAGGACCTCGGACCTCTGAATACCAAAGAGCTTGAGCAGCTCGAGCGTCAGTTAGAGTCGT CATTGAACCAAGTTCGGTCAACTAAGACCCAGTATATGCTCGACCAACTTGCTGATCTTCAAAATAAGGAACATCTGTTGCTGGAAGCTAACAGAGGTTT GACAATAAAGCTGGATGAAATCAGTGCAAGAAATAGCCTCCGACCATCATGGGAAGGTGATGATCAGCAAAATATGTCCTACGGCCACCAGCATGCTCAG TCTCAGGGGCTATTCCAGGCTTTAGAATGCAATCCCACTTTGCAAATAGGCTACAACCCTGTTGGTTCAGACCAGATGACTGCAACAACACATGCCACCC AGCAAGTCCATGGGTTCATTCCAGGATGGATGCTTTGA
AA sequence Show only first row Show all	>Potri.004G115500.7 pacid=42795822 polypeptide=Potri.004G115500.7.p locus=Potri.004G115500 ID=Potri.004G115500.7.v4.1 annot-version=v4.1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAEEVNKPAKELESSYREYLKVKAR FEALQRTQRNLLGEDLGPLNTKELEQLERQLESSLNQVRSTKTQYMLDQLADLQNKEHLLLEANRGLTIKLDEISARNSLRPSWEGDDQQNMSYGHQHAQ SQGLFQALECNPTLQIGYNPVGSDQMTATTHATQQVHGFIPGWML

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	0	1
					Potri.001G276804 [exp]	9.16	1.0000
					Potri.001G330250 [exp]	9.89	1.0000
AT5G28780			PIF1 helicase (.1)		Potri.006G157501 [exp]	10.95	1.0000
					Potri.001G466250 [exp]	11.22	1.0000
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.006G166100 [exp]	12.84	0.9984
					Potri.006G102050 [exp]	15.16	1.0000
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	15.42	1.0000
					Potri.005G134725 [exp]	17.14	1.0000
					Potri.005G145702 [exp]	17.54	1.0000
					Potri.006G229001 [exp]	18.70	1.0000

Compare expression of checked genes

Potri.004G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.