Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39510 325 / 5e-114 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT1G26670 283 / 2e-97 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT3G29100 250 / 7e-85 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 177 / 6e-56 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087700 [exp] 366 / 3e-130 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 290 / 2e-100 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.008G091000 [exp] 290 / 3e-100 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021624 [exp] 333 / 3e-117 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10034696 [exp] 328 / 3e-114 AT5G39510 318 / 5e-110 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10026134 [exp] 266 / 9e-92 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10037141 [exp] 261 / 8e-89 AT1G26670 324 / 1e-113 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10036788 [exp] 217 / 5e-71 AT1G26670 243 / 3e-81 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 188 / 4e-60 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 96 / 9e-23 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF05008 [poplar] [flax] V-SNARE Vesicle transport v-SNARE protein N-terminus CL0147 [poplar] [flax] Traffic PF12352 [poplar] [flax] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Potri.004G115700.2 pacid=42794213 polypeptide=Potri.004G115700.2.p locus=Potri.004G115700 ID=Potri.004G115700.2.v4.1 annot-version=v4.1 ATGACCGACATATTTGAAGGATACGAGCGTCAATACTGCGAACTCTCTTCTAATTTATCCAGAAAATGCACCGCTGCTCTTTCTCTTGATGGAGAGAAAA AGAAGCAAAAGATTTCCGAAGTAAAAGCTGGATTAGAGGATGCTGAAGCTTTGATTCGGAAAATGGATCTGGAAGCGAGAAATTTGCAGCCAAATGTGAA GGCTGTTCTTCTGGCTAAATTGAGGGAGTACAAGTCAGATTTGAACAATCTAAAAACTGAGGTTAAAAGAATTGGTTCTGGTAATCTTAATGCAGCTGCT CGCGATGAGCTCTTGGAAGCTGGAATGACTGATGCCTTGATGGCCTCAGGAGATCAAAGATCAAGATTGATGATGGCGACGGAAAGACTATATCATTCCA GTGACAGAATTAAGGATAGTAGAAGAACTATGCTTGAAACAGAAGAACTTGGTGTTTCAATTCTTCAAGATTTGCATCAACAGCGACAGTCTCTCTTACA TGCACATAACACGCTTCATGGAGTGGATGACAACATCGGTAAGAGTAAGAGAGTATTGACTGCCATTTCGAGGAGGATGAACAGGAACAAGTGGATGATC AGTGCCATCATTGCTGTTCTTGTTGTTGCCGTCATCTTGATCCTGTACTTCAAACTCAAATAG
AA sequence Show only first row Show all	>Potri.004G115700.2 pacid=42794213 polypeptide=Potri.004G115700.2.p locus=Potri.004G115700 ID=Potri.004G115700.2.v4.1 annot-version=v4.1 MTDIFEGYERQYCELSSNLSRKCTAALSLDGEKKKQKISEVKAGLEDAEALIRKMDLEARNLQPNVKAVLLAKLREYKSDLNNLKTEVKRIGSGNLNAAA RDELLEAGMTDALMASGDQRSRLMMATERLYHSSDRIKDSRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIGKSKRVLTAISRRMNRNKWMI SAIIAVLVVAVILILYFKLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Potri.004G115700 [exp]	0	1
AT4G15930			Dynein light chain type 1 fami...		Potri.008G219900 [exp]	3.46	0.9268
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	3.60	0.9366	Pt-PRO1.4
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	4.47	0.9248
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	5.00	0.8987
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	5.65	0.9299	Pt-ARP2.1
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.008G040300 [exp]	5.91	0.9168	Pt-VMA10.1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.008G097000 [exp]	6.32	0.9195
AT5G21070			unknown protein		Potri.009G158800 [exp]	7.74	0.9177
AT5G48520		AtAUG3	augmin 3, unknown protein		Potri.014G191100 [exp]	7.74	0.9047
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	8.94	0.9155

Compare expression of checked genes

Potri.004G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.