Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HYP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01100 867 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 703 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G58520 511 / 7e-172 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 491 / 3e-164 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G54510 393 / 9e-127 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G32090 384 / 5e-122 early-responsive to dehydration stress protein (ERD4) (.1) AT4G22120 379 / 7e-121 ERD (early-responsive to dehydration stress) family protein AT3G21620 377 / 3e-120 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 375 / 4e-119 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 371 / 1e-117 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164100 [exp] 828 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 813 / 0 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.002G113800 [exp] 542 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 435 / 5e-143 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 384 / 2e-122 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 374 / 3e-118 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 372 / 3e-118 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 371 / 3e-117 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.011G009900 [exp] 362 / 3e-114 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005223 [exp] 912 / 0 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10037139 [exp] 744 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 741 / 0 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10004597 [exp] 537 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 535 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 477 / 2e-159 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10043455 [exp] 407 / 8e-132 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10002133 [exp] 398 / 2e-127 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10035300 [exp] 393 / 3e-126 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 392 / 7e-126 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport CL0221 [poplar] [flax] RRM PF14703 [poplar] [flax] PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter
Representative CDS sequence Show only first row Show all	>Potri.004G115800.1 pacid=42795402 polypeptide=Potri.004G115800.1.p locus=Potri.004G115800 ID=Potri.004G115800.1.v4.1 annot-version=v4.1 ATGATACTTTCAGCTCTTTTAACTTCAGTTGGAATCAATCTTGGACTGTGCTTGTTGTTTTTCACTTTGTATTCAATATTGAGGAAGCAACCTGGTAATT TTTACGTGTATGCACCCCGTTTGGTCGATAAAGAGAAATCTCAGCCACAGGAGAGTGATGATTTTTACTTGGAAAGGTTATTGCCTTCTGCTGGTTGGGT TAGAAATGCTTGGCAGCTTTCTGAAGATGAAATCTTGTCAATTTCGGGTTTAGATGGTCTCGTGTTAACTCGGATCTTCACCTTCAGCTTGAAAGTGTTC ACCGTTGCTGGGGTTATTGGAATCTCCATCCTTCTTCCAATTAATTATTTTGGGAACCAGCTAAGTGATGATTTTGGCCATTTGCCGAACAAGTCTTTGG ATTCATTTAGTATATCAAATGTCAATGACGGTTCAAACAGGTTATGGGTTCACTTTTCTGCTGCATATATTTTTACTGGAGTTGTCTGCTATCTTCTGTA TTACGAGCATAACTATATGTCAGCAAAAAGGATTGCTTACTTCTATTCATCCAAACCGCAGCCTCATCAGTTTACAATATTAGTCCGCAGTATCCCTTCC TCATCTGGAAAAAACTTTAGTGAAACTGTTGAGAGTTTTTTCACAGAGTATCATCCTTCTACTTATCTTTCACATTCAATGGTTCATCGAACAAGCAAAA TTCAAGATCTCATTAATGATGCGGACAAATTGTATAGAAAGCTTGACTGCATGAAATCAAACAACCATTCTCAGCAAAACTTCAGACGTGATGGCTTTTT AGGACTCACTGGACGCAAAGTTAATCTTTTAGACCTCTATGAAAAGAAGTTGGAAGATTTGGAAGATAATTTGAGGAAGGAGCAAAATTTATTGGCTGGA GAGGAAGTTCCAGCCGCTTTTGTTTCATTCAAGTCGCGGTTTGGTGCTGCAGTAGCCTTACACATCCAACAGGGGGTTAATCCCACAGAATGGGTCACTG AGCGAGCTCCTGAGCCTCAGGATGTTCACTGGGCTTTCTTTTCTGCATCATTCATTAAAAGATGGATCTTCAAACTGGTGGTGCTTGTTGCATCATTTGC TCTAATTGTTCTTTTTCTTATTCCAGTTGTGATAGTGCAAGGTCTTGCTAATCTGGATCAGTTGGAAAAATGGTTTCCTTTTCTGAAAGACATACTGAGC CTAACTGTTGTCAGTCAAGTAATTACAGGATATCTTCCAAGTCTCATTCTGCAGTTATTTCTTTCTTTTGTTCCACCAATTATGTTAACATTTTCCGCCA TTCAAGGATACATTTCTCGCAGTCAAATAGAAAGAAGTTCTTGTTCCAAGATGCTATGGTTTATCATATGGAACATCTTCTTTGCAAATGTACTGTCAGG GTCAGCTTTGTATCTAGTCAATGTCTTCCTTGAGCCCAAAAATATTCCCAGGGTGCTAGCTGAAGCTGTCCCAGGTCAGGCATCGTTCTTCATTTCATAT GTTGTGACTTCTGGGTGGACCAATCTATCATCAGAACTCTTCCGATTGATTCCACTGGTTTGCAGTTTTTGGAAAAGACTATTTTCAGGAAAATATGGGG ATGAATTTGAGGTTCCATCAATTCCTTACTATAATGATATCCCCACTATTCTCTTCTTTGGACTTCTGGGTATAACGTACTTTTTCCTCTCTCCCCTAAT TCTGCCATTTCTCTTGGTTTACTTTTGCCTTGGATACATCATCTTTCGCAACCAGCTGTTGAATGTGTATGCCCCAAAGTATGAAACAGCTGGGATGTTT TGGCCTATAGTGCACAATTCAACAATATTTTCCTTGATACTGATGCATATTATTGCAATTGGAATATTTGGGCTTAAGAAGCTACCTTTGGCATCTAGTT TAATTATTCCTCTCCCCGTTCTCACTCTTATCTTCAATGCGTACTGCCAGAAGCGGTTCCTACCTTTATTTAAAGCCTATCCTACTGAGTGTTTGATAAA AAAAGATAGAAAAGACCTGAATGAAGCAGGCATGACCGAGTTTTATGATAAATTAGTCACTGCATATCAAGATCCAGCTCTGAGGCCAGTTCAGTATGCC AGAAGCTCTGACAGGGACACTTCTCCCCTACTTCACAGTACTGAAGTTTGA
AA sequence Show only first row Show all	>Potri.004G115800.1 pacid=42795402 polypeptide=Potri.004G115800.1.p locus=Potri.004G115800 ID=Potri.004G115800.1.v4.1 annot-version=v4.1 MILSALLTSVGINLGLCLLFFTLYSILRKQPGNFYVYAPRLVDKEKSQPQESDDFYLERLLPSAGWVRNAWQLSEDEILSISGLDGLVLTRIFTFSLKVF TVAGVIGISILLPINYFGNQLSDDFGHLPNKSLDSFSISNVNDGSNRLWVHFSAAYIFTGVVCYLLYYEHNYMSAKRIAYFYSSKPQPHQFTILVRSIPS SSGKNFSETVESFFTEYHPSTYLSHSMVHRTSKIQDLINDADKLYRKLDCMKSNNHSQQNFRRDGFLGLTGRKVNLLDLYEKKLEDLEDNLRKEQNLLAG EEVPAAFVSFKSRFGAAVALHIQQGVNPTEWVTERAPEPQDVHWAFFSASFIKRWIFKLVVLVASFALIVLFLIPVVIVQGLANLDQLEKWFPFLKDILS LTVVSQVITGYLPSLILQLFLSFVPPIMLTFSAIQGYISRSQIERSSCSKMLWFIIWNIFFANVLSGSALYLVNVFLEPKNIPRVLAEAVPGQASFFISY VVTSGWTNLSSELFRLIPLVCSFWKRLFSGKYGDEFEVPSIPYYNDIPTILFFGLLGITYFFLSPLILPFLLVYFCLGYIIFRNQLLNVYAPKYETAGMF WPIVHNSTIFSLILMHIIAIGIFGLKKLPLASSLIIPLPVLTLIFNAYCQKRFLPLFKAYPTECLIKKDRKDLNEAGMTEFYDKLVTAYQDPALRPVQYA RSSDRDTSPLLHSTEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	0	1	HYP1.1
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104800 [exp]	1.73	0.6630
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	3.16	0.6661
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	6.92	0.6610
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	10.24	0.6414	Pt-UVH6.1
AT2G04340			unknown protein		Potri.001G241100 [exp]	11.48	0.5926
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Potri.005G111000 [exp]	11.83	0.5963
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	14.83	0.6722
AT5G54920			unknown protein		Potri.001G423200 [exp]	19.49	0.6554
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	22.36	0.6331
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G262900 [exp]	24.91	0.5925

Compare expression of checked genes

Potri.004G115800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.