Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AKIN10.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 879 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 814 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 638 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT4G24400 291 / 9e-94 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT2G26980 290 / 9e-94 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 291 / 4e-93 Ca2+regulated serine-threonine protein kinase family protein (.1) AT3G17510 283 / 4e-90 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G01140 281 / 2e-89 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 276 / 7e-87 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 271 / 3e-85 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087900 [exp] 988 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 734 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 291 / 3e-93 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 284 / 1e-90 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.009G021000 [exp] 283 / 2e-90 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.014G104200 [exp] 280 / 8e-89 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 279 / 3e-88 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 278 / 4e-88 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G096042 [exp] 275 / 1e-86 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035801 [exp] 941 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10001290 [exp] 939 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10012696 [exp] 915 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10036582 [exp] 892 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 280 / 1e-88 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 278 / 3e-88 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 276 / 2e-87 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 271 / 1e-85 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10002692 [exp] 267 / 8e-84 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10024448 [exp] 268 / 9e-84 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0573 [poplar] [flax] KA1-like PF02149 [poplar] [flax] KA1 Kinase associated domain 1 CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.004G115900.2 pacid=42793981 polypeptide=Potri.004G115900.2.p locus=Potri.004G115900 ID=Potri.004G115900.2.v4.1 annot-version=v4.1 ATGGATGGGTCATCTTACAGAGGCAGCAGTAGTGTGGATATGTATTTAGCAAATTATAAGCTTGGTAAAACACTTGGAATCGGTTCCTTTGGCAAGGTGA AAATAGCAGAGCATGCATTGACGGGGCACAAAGTTGCCATCAAGATACTTAACCGCCGTAAGATAAAAAACATGGAGATGGAAGAAAAAGTGAGAAGAGA AATCAAAATCTTGAGACTGTTTATGCATCCTCACATTATACGACTTTATGAGGTTATAGAAACACCGACTGACATATATGTTGTCATGGAGTATGTGAAG TCTGGGGAGCTCTTTGATTATATCGTGGAGAAGGGTAGATTGCAGGAAGATGAGGCACGCAATTTCTTCCAGCAGATAATTTCCGGTGTGGAATATTGCC ACAGGAATATGGTTGTTCACAGAGACCTTAAGCCTGAGAATTTGTTATTGGATTCTAAATGGAATGTGAAGATAGCTGATTTTGGGCTGAGCAATATAAT GCGAGATGGTCATTTTCTAAAGACAAGCTGTGGAAGCCCAAACTATGCTGCCCCAGAGGTGATTTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTA TGGAGCTGCGGTGTTATATTGTATGCTCTTCTCTGCGGTACACTACCTTTCGATGATGAAAACATTCCCAACCTCTTTAAGAAAATAAAGGGTGGGATAT ACACTCTTCCCAGTCATTTATCACCTGGAGCAAGAGATCTTATACCAAGGATGCTTGTGGTTGATCCAATGAAGCGAATGACCATTCCTGAAATTCGTCA ACATCAATGGTTCCAAGCTCGCCTTCCCCGTTATTTGGCCGTGCCCCCACCAGATACAATGCAACAAGCTAAAAAGATTGATGAGGAAATTCTCCAAGAA GTGATCAAGATGGGATTTGACAGGAACCAGCTAATTGAATCTCTTCGCAACAGAATGCAAAATGAGGGTACTGTTGCTTACTATTTGTTACTGGATAATC GATTTCGTGTTTCCAATGGCTATCTTGGAGCTGAGTTCCAAGAAACTATGGAATGTGCATTCAATGGAATGCATCAGAATGAATCTTCTTCTCCAGCTGG TGGACACCGCCTTCCAGGATTCATGGATTATCAAGGAATGGGTTTGAAATCACAGTTCCTAGTAGAGAGGAAATGGGCTCTTGGACTCCAGTCTCGAGCC CACCCTCGTGAAATAATGACAGAAGTTCTCAAAGCTTTGCAAGAACTGAATGTATCCTGGAAGAAAATTGGTCAGTACAATATGAAGTGCAGGTGGATTC CAGGCACTCCTGGTCACCATGAAGGAATGGTTAATGATCCAGTGCACACCAATCATTTCTTTGGGGATGAACCCACCATTATTGAAAATGATGGAGTCAC TAATTCACCAAATGTGGTCAAGTTTGAAGTGCAGCTATACAAAACTCGTGATGAGAAGTACCTGCTGGACTTGCAAAGAGTACAGGGCCCGCAGTTTCTC TTTTTGGATCTTTGTGCTGCTTTTCTTGCTCAGCTCCGGGTCCTGTAG
AA sequence Show only first row Show all	>Potri.004G115900.2 pacid=42793981 polypeptide=Potri.004G115900.2.p locus=Potri.004G115900 ID=Potri.004G115900.2.v4.1 annot-version=v4.1 MDGSSYRGSSSVDMYLANYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVK SGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDV WSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHQWFQARLPRYLAVPPPDTMQQAKKIDEEILQE VIKMGFDRNQLIESLRNRMQNEGTVAYYLLLDNRFRVSNGYLGAEFQETMECAFNGMHQNESSSPAGGHRLPGFMDYQGMGLKSQFLVERKWALGLQSRA HPREIMTEVLKALQELNVSWKKIGQYNMKCRWIPGTPGHHEGMVNDPVHTNHFFGDEPTIIENDGVTNSPNVVKFEVQLYKTRDEKYLLDLQRVQGPQFL FLDLCAAFLAQLRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.004G115900 [exp]	0	1	Pt-AKIN10.2
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	3.31	0.7091	Pt-UBP3.1
AT2G36300			Integral membrane Yip1 family ...		Potri.009G152600 [exp]	9.32	0.6678
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.007G139800 [exp]	18.89	0.6524	Pt-MPK6.1
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G418500 [exp]	22.44	0.6534
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.001G391900 [exp]	23.23	0.5962	Pt-PEPC.1
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	27.69	0.6207
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	48.27	0.6236
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	57.42	0.5364	CUL3.2
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	83.49	0.5860	EMB78.2
AT2G30880			Pleckstrin homology (PH) domai...		Potri.005G205300 [exp]	89.96	0.5889

Compare expression of checked genes

Potri.004G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.