Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15570 237 / 9e-75 Bromodomain transcription factor (.1) AT3G02160 234 / 9e-74 Bromodomain transcription factor (.1) AT4G34340 193 / 4e-58 TAF8 TBP-associated factor 8 (.1) AT1G31240 90 / 3e-20 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094900 [exp] 639 / 0 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.006G125200 [exp] 305 / 1e-101 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.016G092000 [exp] 297 / 2e-98 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1) Potri.015G118200 [exp] 116 / 6e-30 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 105 / 5e-26 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013818 [exp] 261 / 2e-84 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1) Lus10026530 [exp] 251 / 2e-80 AT4G34340 270 / 2e-88 TBP-associated factor 8 (.1) Lus10040612 [exp] 107 / 5e-27 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10018295 [exp] 101 / 1e-24 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF07524 [poplar] [flax] Bromo_TP Bromodomain associated CL0012 [poplar] [flax] PF10406 [poplar] [flax] TAF8_C Transcription factor TFIID complex subunit 8 C-term
Representative CDS sequence Show only first row Show all	>Potri.004G116200.2 pacid=42794014 polypeptide=Potri.004G116200.2.p locus=Potri.004G116200 ID=Potri.004G116200.2.v4.1 annot-version=v4.1 ATGAGCCATGGAGGTGGGGAGAGTGGAAGATTGCATGAAAAGGTAGGGCATAATGGTAAGAGAAAATCCCGTGCAAGTAGAGATGAATTTGCTCGAGCGA TTGGGAAGATTGCTGTAGCGCAAATGTGTGAGAGTATGGGCTTTCAGTCCTTTCAGCAGTCTGCTCTTGAGACATTAACTGATGTTACTACTTGGTATAT ACGGAATATAGGAAAGGCTGCACAGTTGTGTGCTAATTTAGCTGGTAGGACGGAGGGTAATGTTTTTGATGTTATTCAAGGATTGGAAGAGTTGGGTTTG CCACAGGGGTTTGCTGGTGCCTCAGATGTTGACCATTGTCTTGCAAGTTCGGGTATTGTTAGGGAGATTGCTCAGTATATTGGGGATGCAGATGATATCC CGTTTGCTTATTCTATTCCTCCTTTCCCAGTTGCTAGAGAACGGAAGCCTGCGCCAAGTTTTTCCCAGATTGGTGAGGAGCCTCCTGAGGAGCACATTCC AGCTTGGTTACCTGCATTTCCTGATCCCCAGACTTATGCTCAGCTGCCGGAAGGGAATGAAGGACGTGCTGATTTAAATGCAGATAATATTGAGTCTGTA AGGCAGCACCAGAAGATGGATGTGTCTTACATGAATTTGCCACAGCAGTTTAATTGCAATGGTTCTGAAGGACCTTCCTCTGTTGCATTTGGTGACAGTG CTAAGGCAACACAAAGGACTGTGAGTAACCCGTTTCTTGCTGCTCCTCTGCAATTCGGAGTGAAGGAAGTGTCCCATGTTGTTCCTCCAGCTAAGCTTTC TGATGAAGCAGCTGTGAGATATCCTGTTGAGCAAACCCGTACCATGGATAATAATATGTCAGTGATGAAGACATTTGCTCCTGCCATTGAAGCAATGAAG AGTAGGTTATGTGATTCTGGGGAGGGACAGAAGAAGGTTTTTTTCAATCAAAGACCTGCCGTGCAATTTAAGATTGGGGTTGGAAAGAATTCCCTGGATG GAGCTCCAGATTTGAGCCTTCAGAACAAGGGTATTAAGAAGATCAGCATGTGGTCTGGGAAAGATAGTGAGAATGATGATCAGAAAAGGAGAGCTGAGAA AATTCTAAAGCAATCGATGGAAAACCCTGGTGAACTGGCTCAGTTGTAA
AA sequence Show only first row Show all	>Potri.004G116200.2 pacid=42794014 polypeptide=Potri.004G116200.2.p locus=Potri.004G116200 ID=Potri.004G116200.2.v4.1 annot-version=v4.1 MSHGGGESGRLHEKVGHNGKRKSRASRDEFARAIGKIAVAQMCESMGFQSFQQSALETLTDVTTWYIRNIGKAAQLCANLAGRTEGNVFDVIQGLEELGL PQGFAGASDVDHCLASSGIVREIAQYIGDADDIPFAYSIPPFPVARERKPAPSFSQIGEEPPEEHIPAWLPAFPDPQTYAQLPEGNEGRADLNADNIESV RQHQKMDVSYMNLPQQFNCNGSEGPSSVAFGDSAKATQRTVSNPFLAAPLQFGVKEVSHVVPPAKLSDEAAVRYPVEQTRTMDNNMSVMKTFAPAIEAMK SRLCDSGEGQKKVFFNQRPAVQFKIGVGKNSLDGAPDLSLQNKGIKKISMWSGKDSENDDQKRRAEKILKQSMENPGELAQL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15570			Bromodomain transcription fact...		Potri.004G116200 [exp]	0	1
AT1G17780			unknown protein		Potri.001G376800 [exp]	8.12	0.8132
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	12.96	0.8316
AT4G10270			Wound-responsive family protei...		Potri.019G116800 [exp]	13.19	0.7912
AT2G47710			Adenine nucleotide alpha hydro...		Potri.014G130100 [exp]	13.96	0.7707
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	17.32	0.7971
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.004G217900 [exp]	18.00	0.7861
AT1G36990			unknown protein		Potri.002G089100 [exp]	22.53	0.7975
					Potri.001G042800 [exp]	25.49	0.7557
AT5G40520			unknown protein		Potri.017G018300 [exp]	27.92	0.7656
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	30.85	0.7676

Compare expression of checked genes

Potri.004G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.