Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 234 / 8e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 196 / 5e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 135 / 9e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 97 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059000 [exp] 298 / 9e-93 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 228 / 4e-69 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 189 / 2e-54 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032890 [exp] 299 / 4e-95 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 276 / 2e-79 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 274 / 5e-78 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 243 / 1e-69 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 236 / 4e-67 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 185 / 2e-53 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 180 / 4e-51 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 94 / 1e-21 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 83 / 2e-17 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.004G116400.6 pacid=42795883 polypeptide=Potri.004G116400.6.p locus=Potri.004G116400 ID=Potri.004G116400.6.v4.1 annot-version=v4.1 ATGTTAGCATCTATTTTTGAGAGTGGCAACGAGGGCATGGATATGACCAAGGAAGCTCCAGAAGTACCCTCATCACGGAAAAGAAAAGTGAGACAAAAAA ATAGGAGGAGAAATAATCAACAGGATAGTGATCCAGCTCATAAACAGGCTGAGGAAGGTGGCTTACCAAGTACTTATAATTTGAATAATGTCTCAACTGT ATGCTTATCAGATGAAAGAAACAGAGAAGCAGTTTTTTTATCAGATAATGGTGAAACAAAACTTGTGAACAAGGGCATGGAAACAAGCACGGAGTCTCTA GAAGTACCTTCTTTGCGAAAAAGAAAAGCAAGAAAAAGAAGCAAGAGGAGAAATAATCAACAGGATAGTGATCCAGCTCATAAGCAGGCTGAGGAAGGTG GCATGGTGATAACTCATAATTTGAATAATGTCTCAACTGTATCTTTATCAGATGAAAGAAACAGAGAAGCAGTTTTTCTATCAGATAATGGTGAAACAAA ACTTGTGAACAAGGGCATGGAAACAAGCACGGAATCTCTAGAAGTACCTTCTTTGCGAAAAAGAAAAGCAAGAAAAAGAAGCAAGAGGAGAAATAATCAA CAGGATAGTGATCCAGCTCATAAGCAGGCTGAGGAAGGTGGCATGGTGATAACTCATAGTTTGAATAATGTCTCAACTGTATCTTTATCAGATGAAAGAA ACAGAGAAGCAGTTTTTCTATCAGATAATGGTGAAACAAAACTTGTGAACAAGGGCATGGAAACAAGCACGGAATCTCTAGAAGTACCTTCTTTGCGAAA AAGAAAAGCAAGAAAAAGAAGCAAGAGGAGAAATAATCAACAGGATAGTGATCCAGCTCATAAGCAGGCTGAGGAAGGTAGCATGCTGAGTACCTGTAAT TTGAATAATGTCTCAACTGTATGTTTATCTGATGAAAGAAACAGAGAAGCAGTGTTTTTATCAGATAATGGTGAAACTAAACTTGTGAACAAGGGCATGG AAACAAGCAAGGAGTCTCTAGAAGTACCTTCTTTGCGGAAAAAAAAAGCAAGAAAAAGAAGCAAGAGGAGAAATAATCAACAGGATAGTGATCCAGCTAA TAAGCAGGCTGAGGAAGGTGGCTTGCCAAGTACTAATAATTTGAATAATGCGTCAACTGTATGTTTATCACATGAAACAAACAGAGAAGTTGCTTTGTTA TCAAATAGTGGTAAAACAAAACTTGTGAACAAGGGCATGGGAACAACCAAGGAGGCTCCAGAAGTACCTTCTTTGCAAAAAAGAAAAGCGAGACGAAGAA ACAGGAGAAGAAATAATCAACAGGATAGTGATCCAGCTCATATGCAGGTGGAGGAAGGTGGCATGCTGAGCACTTATAATTTGAATAGTGTGTCAACTGT ATGTTTTTCAGATGAAACAGACAGAGAAGTGGTTTTTTTATCAGATAAAGGTGAAACAAAATTTGTGAACAAGGGCATGGAAACAACCAAGGAGGCTTCA GAAGTACCATCTTTGCAAAAAACAAAAGCAAGACGAAGAAACAGGAGGGGAAATAATCGTCTGGATAGGGAAACATGTTCTGCTTCTCTTGCTATTCGTG GCAAAGAGAATGTACCCCCTGAGAGTTTATCTTGCTTACTAGAAATAACACCCATATGTCTTGTGAGGAAAAAACTACTTATTCTTGATATAAATGGGGT GCTTGTGGATATAGTGTCAGCTCCTCCAAAGGGCCATATAGCAGATATAAAGATTGCAAAAAAAGCAGTTTTTAGAAGACCCTTTTGCTTTGATTTTCTA AAGTTCTGCTTTGAGAGATTTGAAGTGGGCGTTTGGTCCTCAAGAACTAGGAAGAATGTTGATAGAGTGGTTGAGTTTGTGATGGGAGATATGAAGAAAA AGTTGCTGTTTTGTTGGGATCTATCCAAATGCACTGCAACACAGTTCTGCACTCTAGAAAACAAGCATAAACCCTTGGTTTTTAAGGAACTGAGGAGAAT TTGGGAAAAAGACGATTCTGAACTTCCATGGGAGAAGGGAGATTATAGTGAATCAAATACGATGTTATTGGATGATTCTCCTTACAAAGCCTTGCTTAAT CCTGCACACACTGCAATCTTCCCTTATCCGTACCAGTTTCAGAACAGCAATGATAATTCTTTAGGTGCTGGAGGTGATCTAAGGGTTTATCTGGAAGAAT TGGCAGCAGCTGATAATGTGCAGGAATTTGTAGAACACCACCCATTTGGTCAACGAGCTATCTCTCAAAGAAGTCCAAATTGGGGCTTCTTCCTCAAGGC TATCAGATCAGTGTGTCCTGTACAAGTGACAAGATAA
AA sequence Show only first row Show all	>Potri.004G116400.6 pacid=42795883 polypeptide=Potri.004G116400.6.p locus=Potri.004G116400 ID=Potri.004G116400.6.v4.1 annot-version=v4.1 MLASIFESGNEGMDMTKEAPEVPSSRKRKVRQKNRRRNNQQDSDPAHKQAEEGGLPSTYNLNNVSTVCLSDERNREAVFLSDNGETKLVNKGMETSTESL EVPSLRKRKARKRSKRRNNQQDSDPAHKQAEEGGMVITHNLNNVSTVSLSDERNREAVFLSDNGETKLVNKGMETSTESLEVPSLRKRKARKRSKRRNNQ QDSDPAHKQAEEGGMVITHSLNNVSTVSLSDERNREAVFLSDNGETKLVNKGMETSTESLEVPSLRKRKARKRSKRRNNQQDSDPAHKQAEEGSMLSTCN LNNVSTVCLSDERNREAVFLSDNGETKLVNKGMETSKESLEVPSLRKKKARKRSKRRNNQQDSDPANKQAEEGGLPSTNNLNNASTVCLSHETNREVALL SNSGKTKLVNKGMGTTKEAPEVPSLQKRKARRRNRRRNNQQDSDPAHMQVEEGGMLSTYNLNSVSTVCFSDETDREVVFLSDKGETKFVNKGMETTKEAS EVPSLQKTKARRRNRRGNNRLDRETCSASLAIRGKENVPPESLSCLLEITPICLVRKKLLILDINGVLVDIVSAPPKGHIADIKIAKKAVFRRPFCFDFL KFCFERFEVGVWSSRTRKNVDRVVEFVMGDMKKKLLFCWDLSKCTATQFCTLENKHKPLVFKELRRIWEKDDSELPWEKGDYSESNTMLLDDSPYKALLN PAHTAIFPYPYQFQNSNDNSLGAGGDLRVYLEELAAADNVQEFVEHHPFGQRAISQRSPNWGFFLKAIRSVCPVQVTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.004G116400 [exp]	0	1
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	6.32	0.7084
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	9.16	0.6695
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	12.12	0.6993
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.015G038600 [exp]	12.92	0.7505	AMI3,TOC64.2
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Potri.007G035300 [exp]	34.78	0.6570
AT4G38710			glycine-rich protein (.1.2)		Potri.004G169100 [exp]	39.82	0.6073
AT5G51130			S-adenosyl-L-methionine-depend...		Potri.018G084700 [exp]	42.62	0.6267
AT1G07210			Ribosomal protein S18 (.1)		Potri.006G170500 [exp]	50.79	0.6319
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	55.13	0.6149
AT3G02220			unknown protein		Potri.004G116800 [exp]	57.70	0.6131

Compare expression of checked genes

Potri.004G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.