Plant FIBer expression Database

Potri.004G116700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15610 570 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
AT3G02200 559 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
AT4G19006 50 / 1e-06 Proteasome component (PCI) domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G095300
[exp]
739 / 0 AT5G15610 575 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013192
[exp]
623 / 0 AT5G15610 578 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Lus10030706
[exp]
599 / 0 AT5G15610 554 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
Representative CDS sequence
>Potri.004G116700.1 pacid=42794576 polypeptide=Potri.004G116700.1.p locus=Potri.004G116700 ID=Potri.004G116700.1.v4.1 annot-version=v4.1
ATGACGACTGTGGTCCCCACCTCCGAAGAGGATCCAGCCCTCTCCGTCGTCCGTTTCACCTCCGAACTCTCCTGGTCCGACGCCGGCCCCGAGGTAGCGG
AACAACAAGTGAGTAGGCTGTGTGTGGAAGCGCAAGAATGTATGGTGAGGAATAGGTGGTTGGATTTGACTTCTTTAATGTTAACTTCCGCTGATATTGT
TTTTTCCAACTCCAAGGTTTCCGAGAAAGATCTTGAATGTATCTTCACTGTCATTTGCAATCTTGTCACAAAGTCTGAAAGTCCAGATGAAGAACTTGAG
ATGGCAAAACTTATATGCACAAAAATTATTCAACAACCAAGTGACAAGCCTGTGCTGCGCCTAAAGATCTTGTTCAATCTGTACAACCTACTGGATAATG
TGTACTGCCGGTTCTATGTTTACATGAAGGCCTTAAATTTGGCCATGAGTGGAAAAGTCACTGAACACATCATTCCTTCTTGCAAAAAGATTGATAGCTT
CTTGAAAGAGTGGAATCTTGAAGTCCAGGATCAGAGGGAGCTTTTTCTCTGTGTTGCCAATGCACTAAAAGATAGTAAGAGCTCTGCGAAGGATTCTTTC
AAATTCTTGACTAGGTATTTAGCCACTTTCTCTGGCGAGGATGCTTATAAAATGGGCGAAGCCAAGGATGAAGCTGCACGTACAATTATTGATTTTGTTA
AGGCACCTGACATGTTTCAGTGTGATCTACTAGATATGCCTGCTGTTGCGCAATTGGAAAAGGATGCTAAATATGCATTGGTATATCAGCTCCTAAAGAT
TTTCCTGACTCTGAGGCTGGATGCTTATCTGGAGTTTCAAGCTGTGAATTCTGCTCTTCTGAAAAGCTATGGTCTTGTTCATGAAGATTGTATAGCGAAG
ATGCGGTTGATATCATTGGTGGATCTTGCCTCACATGAATCTGGTCGAATTCCATATACCCTAATCAAAGATACTCTTAGGATCAATGATGATGAGGTGG
AATTATGGGTAGTGAAGGCATTAACTTCCAAGTTAATTGCCTGTAAAATGGACCAGATGAATCAAGTTGTGCTTGTGAGTTCTTGTACTGAGCGTGTATT
TGGGCGACAACAGTGGGGGGTGCTTAGGACAAAGCTTGGTACATGGAGGGATAATATTGGAAATGTCATAAACACCATCCAAGCTAACAAGATCACCGAA
GACAGCTCACAGGCAGTGCAGGGATTGATGATTCGTTAG
AA sequence
>Potri.004G116700.1 pacid=42794576 polypeptide=Potri.004G116700.1.p locus=Potri.004G116700 ID=Potri.004G116700.1.v4.1 annot-version=v4.1
MTTVVPTSEEDPALSVVRFTSELSWSDAGPEVAEQQVSRLCVEAQECMVRNRWLDLTSLMLTSADIVFSNSKVSEKDLECIFTVICNLVTKSESPDEELE
MAKLICTKIIQQPSDKPVLRLKILFNLYNLLDNVYCRFYVYMKALNLAMSGKVTEHIIPSCKKIDSFLKEWNLEVQDQRELFLCVANALKDSKSSAKDSF
KFLTRYLATFSGEDAYKMGEAKDEAARTIIDFVKAPDMFQCDLLDMPAVAQLEKDAKYALVYQLLKIFLTLRLDAYLEFQAVNSALLKSYGLVHEDCIAK
MRLISLVDLASHESGRIPYTLIKDTLRINDDEVELWVVKALTSKLIACKMDQMNQVVLVSSCTERVFGRQQWGVLRTKLGTWRDNIGNVINTIQANKITE
DSSQAVQGLMIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15610 Proteasome component (PCI) dom... Potri.004G116700
[exp]
0 1
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.004G085300
[exp]
1.73 0.9654 RPL24.1
AT1G77940 Ribosomal protein L7Ae/L30e/S1... Potri.007G086800
[exp]
5.91 0.9559
AT3G04840 Ribosomal protein S3Ae (.1) Potri.008G156300
[exp]
6.78 0.9625 RS3.2
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.003G123101
[exp]
7.74 0.9566
AT1G77940 Ribosomal protein L7Ae/L30e/S1... Potri.005G080700
[exp]
8.48 0.9559
AT2G47510 FUM1 fumarase 1 (.1.2) Potri.002G201300
[exp]
9.89 0.8990 FUM1.1
AT4G13170 Ribosomal protein L13 family p... Potri.002G242600
[exp]
11.53 0.9490 Pt-RPL13.3
AT1G74050 Ribosomal protein L6 family pr... Potri.009G065800
[exp]
11.74 0.9554
AT5G43970 ATTOM22-V, TOM2... TRANSLOCASE OUTER MITOCHONDRIA... Potri.002G257200
[exp]
13.96 0.9436 TOM22.1
AT2G27530 PGY1 PIGGYBACK1, Ribosomal protein ... Potri.007G034800
[exp]
16.24 0.9436

Potri.004G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.