Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01240 387 / 2e-128 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 362 / 4e-121 unknown protein AT3G27230 245 / 2e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 242 / 4e-75 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29790 206 / 6e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 43 / 0.0004 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165300 [exp] 381 / 1e-128 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 360 / 2e-120 AT3G05390 753 / 0.0 unknown protein Potri.017G135100 [exp] 293 / 4e-95 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 291 / 7e-94 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 271 / 8e-86 AT3G05390 287 / 2e-92 unknown protein Potri.005G236600 [exp] 251 / 1e-78 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 245 / 3e-76 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 201 / 7e-60 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 187 / 2e-54 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035135 [exp] 541 / 0 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 535 / 0 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010138 [exp] 385 / 6e-130 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 363 / 2e-121 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 357 / 2e-119 AT3G05390 697 / 0.0 unknown protein Lus10020803 [exp] 276 / 3e-88 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 267 / 7e-85 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 239 / 5e-74 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 236 / 5e-71 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 230 / 2e-70 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G116900.1 pacid=42796641 polypeptide=Potri.004G116900.1.p locus=Potri.004G116900 ID=Potri.004G116900.1.v4.1 annot-version=v4.1 ATGCTGAAGAAAAGCAGCTCAAGGTCTCTACAATGTCGTCCTGGAGGCCTTCTTACAATGCTATGTCCTCTCTTGCTCATCAGCCTCCTCACAGTTGTCA TCTTGAGTTCCGATGTCTCTTATCTACACTTCTTCGACACCAACACTTTACCTCACTTGTTCTTCGACACCAGCCCGAACGATATCTCACACAGCCCTAT CGTTTTGCCCTATTCACTTCATAGCCAAATCTCCAATTTGCAGACCCAACTAGGAGCCTTGCTTGGGCAGCTTCACAATGAAAGCTCAGAATCAAAAGTA GCAAAATTTTCTGATCAAGTTCTGCGCATAGCCGTATCAGTGGACAAGCTTGTTAACAGCCTCTCCAGCATATCAGGCAATGCTCCTGCTAGTGGCGATG GAATGAGCAGGGTGGAAGAAGATTTAAGTGAAGCTGGGGAAGGTGAAGATCAAGAACCACCTGGTGTAAAGGTATTCAACACAGGTGAGCTTCATGAATA TACCTCTCCAAAACTCAACAGGCCAAGCGGCAAGAAGAACTTTCTTGGGGTGGAGGCAATCAGTCCTTCCATTGGCTTAACATGTGCCCATATGGCCACA ACTATAAAGCGTTTCATGAGTTACAAAATGTATGGTATGTGCCCAGATGATTGGGACTTGGCTCAAAAGCTTATTACCAGTGGATGTGATCCCTTGCCCA GAAGGAGATGCTTGTCAAGAGCATCTCCAAACTACAACAAGCCATTTCCTGTGAACTCCTCTCTTTGGACCCAACCTAGTGATGCTAACATCTTGTGGAG TCATTATAAATGCAAAGGCTACTCGTGTCTTGTTTCCAACGAAACAAGAGGCAGAAGAGGCTTCTTCAAATGTGCAGACTGTTTCGATCTTTCGAAACGG AGATGGGAGATCCCAACTAACGAGTCTGTTTCAGCTGAGTTCACCATTGATCAAGTTCTAGCATTGAAGCCAAGAGAGATTCGTATTGGACTTGATTTCA GCCCCACAACTGGCACATTTGCTGCACTTATGAAGGAAAGAAATGTTACTATTGCATCAGCAACCTTAAATTTAGGGGCCCCTTTTAACGAGGTGATTGC ACTACGAGGCCTCTTGCCTCTGTATCTATCGATTGGATCAAGATTGCCATTCTTTGACAACACACTCGATATCATTCATTCTACTCTCTTCTTGGATGGT TGGATTGGGAAGGAACTTCTCCAATTTGTGTTGTTTGATTGGGACCGTGCTCTTCGACCAAAGGGGCTCCTCTGGGTGGATCGTTTCTTCTGTTCGAAAG AGGTCATGAAGCTGTATTTGGATGAGTTTGAAAGCCTGAGCTACAAGAAACTACTATGGAGAGTGGTACCAAAGACAGATAAGGATGGAGATGAGCTTTT CTTTTCTGCTGTTCTGGAAAAGCCTATTAGGCGATGA
AA sequence Show only first row Show all	>Potri.004G116900.1 pacid=42796641 polypeptide=Potri.004G116900.1.p locus=Potri.004G116900 ID=Potri.004G116900.1.v4.1 annot-version=v4.1 MLKKSSSRSLQCRPGGLLTMLCPLLLISLLTVVILSSDVSYLHFFDTNTLPHLFFDTSPNDISHSPIVLPYSLHSQISNLQTQLGALLGQLHNESSESKV AKFSDQVLRIAVSVDKLVNSLSSISGNAPASGDGMSRVEEDLSEAGEGEDQEPPGVKVFNTGELHEYTSPKLNRPSGKKNFLGVEAISPSIGLTCAHMAT TIKRFMSYKMYGMCPDDWDLAQKLITSGCDPLPRRRCLSRASPNYNKPFPVNSSLWTQPSDANILWSHYKCKGYSCLVSNETRGRRGFFKCADCFDLSKR RWEIPTNESVSAEFTIDQVLALKPREIRIGLDFSPTTGTFAALMKERNVTIASATLNLGAPFNEVIALRGLLPLYLSIGSRLPFFDNTLDIIHSTLFLDG WIGKELLQFVLFDWDRALRPKGLLWVDRFFCSKEVMKLYLDEFESLSYKKLLWRVVPKTDKDGDELFFSAVLEKPIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	0	1
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	2.44	0.9517
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Potri.009G170000 [exp]	4.58	0.9348	ATCSLD4.1
AT5G26594		ARR24	response regulator 24 (.1)		Potri.003G172932 [exp]	4.69	0.9275
AT5G05820			Nucleotide-sugar transporter f...		Potri.009G040800 [exp]	4.89	0.9409
AT1G67330			Protein of unknown function (D...		Potri.001G056300 [exp]	6.63	0.9380
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	6.70	0.9366
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	7.48	0.9318
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	8.94	0.9280
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184600 [exp]	10.09	0.9123
					Potri.007G088800 [exp]	15.87	0.9200

Compare expression of checked genes

Potri.004G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.