Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 435 / 4e-154 Mitochondrial substrate carrier family protein (.1) AT1G72820 251 / 2e-81 Mitochondrial substrate carrier family protein (.1) AT5G26200 229 / 6e-73 Mitochondrial substrate carrier family protein (.1) AT1G07030 96 / 4e-22 Mitochondrial substrate carrier family protein (.1) AT2G30160 93 / 2e-21 Mitochondrial substrate carrier family protein (.1) AT5G42130 77 / 2e-15 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT1G34065 75 / 5e-15 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 74 / 3e-14 Mitochondrial substrate carrier family protein (.1) AT3G20240 71 / 2e-13 Mitochondrial substrate carrier family protein (.1) AT2G35800 68 / 3e-12 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098500 [exp] 513 / 0 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 270 / 4e-89 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 234 / 1e-74 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 224 / 6e-71 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 101 / 2e-24 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 92 / 4e-21 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 92 / 7e-21 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 81 / 3e-17 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 76 / 6e-15 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041498 [exp] 469 / 3e-167 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 461 / 6e-164 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 460 / 1e-161 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 374 / 1e-130 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 221 / 1e-69 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 219 / 6e-69 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 213 / 2e-66 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 103 / 4e-25 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 103 / 6e-25 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10029770 [exp] 82 / 4e-17 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.004G117000.5 pacid=42794552 polypeptide=Potri.004G117000.5.p locus=Potri.004G117000 ID=Potri.004G117000.5.v4.1 annot-version=v4.1 ATGGCAGCATCATCACTTGGCCAGACCGAGATCAACTGGGACAAGCTCGATAAGTCTAAGTTCTATGTTGTGGGAGCGGGAATATTTACTGGGCTTACAG TTGGTTTATACCCAGTGTCTGTTATAAAAACTAGACTTCAGGTTGCTACGAGGGATAGTGTTGAGAAAAGTGCATCTTCTGTTATTAGAGGCATACTGAA AACAGATGGGGTTCCTGGTCTCTACAGAGGGTTTGGTACTGTCATCACTGGTGCAGTTCCTGCTAGGATTATCTTTCTTACTGCATTGGAGACCACGAAA GTGACTGCTTTCAAGATGGTTGAGCCATTTAATTTCTCTGAACCAACACAAGCAGCCTTAGCAAATGGTATTGCTGGCATGGCAGCGTCTCTTTGTTCTC AAGCTGTCTTTGTTCCCATTGATTTGATTAGCCAAAGGTTGATGGTACAAGGATATTCTGGCCATGAGAAGTATAATGGGGGTCTGGATGTTGCACGCAA GATTATAAGGACCGATGGCATCAGAGGATTTTACAGGGGGTTTGGTCTGTCAGTCATGACTTATTCACCATCTAGTGCTGTATGGTGGGCGAGTTATGGC TCAAGCCAACGCATCATCTGGAGGCTTTTAGGCCAGGGTACTGATCGTGAGGAAGCTGCTCCTAGCAAGTCAACTATAATGCTAGTTCAGGCTACTGGAG GAATTATTGCGGGAGCTACAGCTTCCTGCATCACAACCCCATTAGATACAATTAAGACTCGTTTACAGGTGATGGGACATGAAAGAAGAAGCTCTGCAAG ACAAATTGTTACAAACTTGATTAGGGATGATGGTTGGACAGGCTTCTACAGAGGGTTGGGTCCCAGATTTGTCAGCATGTCAGCATGGGGAACCACAATG ATATTGGCCTATGAATATTTGAGTATGCATTCCTTCTTCTCTTTCACCTTTGGTGTTGTGTATATCTTTTTTCATACAATGAGATTATTATGTGAGAATT TTAACATTGTTAATTTCTGA
AA sequence Show only first row Show all	>Potri.004G117000.5 pacid=42794552 polypeptide=Potri.004G117000.5.p locus=Potri.004G117000 ID=Potri.004G117000.5.v4.1 annot-version=v4.1 MAASSLGQTEINWDKLDKSKFYVVGAGIFTGLTVGLYPVSVIKTRLQVATRDSVEKSASSVIRGILKTDGVPGLYRGFGTVITGAVPARIIFLTALETTK VTAFKMVEPFNFSEPTQAALANGIAGMAASLCSQAVFVPIDLISQRLMVQGYSGHEKYNGGLDVARKIIRTDGIRGFYRGFGLSVMTYSPSSAVWWASYG SSQRIIWRLLGQGTDREEAAPSKSTIMLVQATGGIIAGATASCITTPLDTIKTRLQVMGHERRSSARQIVTNLIRDDGWTGFYRGLGPRFVSMSAWGTTM ILAYEYLSMHSFFSFTFGVVYIFFHTMRLLCENFNIVNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15640			Mitochondrial substrate carrie...		Potri.004G117000 [exp]	0	1
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	6.00	0.6907
AT1G68580			agenet domain-containing prote...		Potri.008G119400 [exp]	7.48	0.6777
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.016G114600 [exp]	8.48	0.6696
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	12.96	0.7015
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	14.10	0.7217
AT5G40100			Disease resistance protein (TI...		Potri.006G283700 [exp]	16.24	0.6682
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	20.78	0.6357
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	24.16	0.6731
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	24.49	0.6975
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	35.09	0.6581

Compare expression of checked genes

Potri.004G117000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.