Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 679 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 585 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 572 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT3G02210 570 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 410 / 9e-141 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 192 / 5e-59 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 145 / 7e-38 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 143 / 6e-37 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 135 / 2e-34 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 134 / 4e-34 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 673 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 626 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 583 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 575 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 573 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.017G098700 [exp] 512 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 493 / 6e-174 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 445 / 9e-155 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 396 / 2e-135 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031972 [exp] 686 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 686 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 646 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 645 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 595 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 583 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 580 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 577 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 577 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 559 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [poplar] [flax] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Potri.004G117200.1 pacid=42794533 polypeptide=Potri.004G117200.1.p locus=Potri.004G117200 ID=Potri.004G117200.1.v4.1 annot-version=v4.1 ATGAAAATGAGATTTCTCTTCTTTATTGTCTTGTTTCTTGTGCTCTTTTCTTGTTCAGGTGCATATGATCCTTTGGATCCAACTGGAAATGTAACAATAA AATGGGATATTATGTCTTGGACGACAGATGGCTATATTGCAATTGTAACATTGTTCAACTTCCAAACGTTCCGGCACTTCATGAAACCTGGATGGACCAT AGGCTGGACATGGGCAAAGAAAGAAATCATATGGTCCATCAATGGTGCTCAAGCGGTTGAACAAGGCGACTGCTCCAAGTTCAAAGCAAACATACCTCAT TCCTGCAAGAGAAGCCCTGCAGTTGTGGACTTGCTTCCCGGTGCTCCTTTCAACCAGCAATTCGGTAATTGTTGCAAAGGCGGAGTAGTGGCAGCATGGG GCAAAGATCCTTCAGCTGCTGTCTCTCAATTTCAGATTACTGTTGGATTATCCGGTACTTCAAATAAAACAGTGAAACTTCCAAAGAGCTTCACCTTGTT AGGTCCAGGACCAGGATACACTTGTGGCCCTCCAAAGATGGTGCCTTCCACCAAGTTTCTTACTCCTGATGGTCTGCGAAGAACTCAGGCCCTGTTGACT TGGAATGTTACCTGCACTTACTCACAATTCATGGCAAGAAAAAACCCAAGTTGCTGTGTATCTCTTTCATCTTTCTACAATCAGATACTCACTCCCTGCC CAACTTGTGCGTGCGGTTGCCAAAACAATGACACTTGTGTCAATGGCGATTCCAGAATTCTTCAATTGCCGGTAGGAAACACAACCCGGAAAGATAATAG CTCTCTTCTGCAATGCACACACCATATGTGCCCGGTTCGAGTGCACTGGCATGTGAAGGTGAACTATAAGGAGTACTGGCGTGTCAAGATTGCGATCACA AATTTCAACTACATGAAGAACTACTCGACTTGGACCCTCGTTGTACAGCATCCGAATCTCAACAACGTAACGCAAGTTTTTAGCTTCGAGTACAAACCTC TCATTGCCTATGACTCGATAAATGACACAGGGATGTTCTATGGCATGAAGGACTACAATGACGTATTAATGGAAGCAGGGCCACTTGGAAATCTTCAATC TGAGGTGCTTCTTCAGAAGGACCAGAACACTTTCACCTTCAAGCAGGGATGGGCATTTCCACGGAAAGTCTACTTCAATGGCGATGAGTGCATGGTACCC CCGCCAGATACATACCCATTTCTGCCCAATTCTGCTCATGGATCCCCACACTTCTCCATGTTGATTTCTACGTTGATTTTCCTGTTCGTGTATATCTGGT AA
AA sequence Show only first row Show all	>Potri.004G117200.1 pacid=42794533 polypeptide=Potri.004G117200.1.p locus=Potri.004G117200 ID=Potri.004G117200.1.v4.1 annot-version=v4.1 MKMRFLFFIVLFLVLFSCSGAYDPLDPTGNVTIKWDIMSWTTDGYIAIVTLFNFQTFRHFMKPGWTIGWTWAKKEIIWSINGAQAVEQGDCSKFKANIPH SCKRSPAVVDLLPGAPFNQQFGNCCKGGVVAAWGKDPSAAVSQFQITVGLSGTSNKTVKLPKSFTLLGPGPGYTCGPPKMVPSTKFLTPDGLRRTQALLT WNVTCTYSQFMARKNPSCCVSLSSFYNQILTPCPTCACGCQNNDTCVNGDSRILQLPVGNTTRKDNSSLLQCTHHMCPVRVHWHVKVNYKEYWRVKIAIT NFNYMKNYSTWTLVVQHPNLNNVTQVFSFEYKPLIAYDSINDTGMFYGMKDYNDVLMEAGPLGNLQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMVP PPDTYPFLPNSAHGSPHFSMLISTLIFLFVYIW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	1.73	0.9812
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	2.44	0.9802
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	3.46	0.9799	Pt-FLA14.3
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	4.58	0.9752
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	4.89	0.9731	PtrFLA14-9,FLA14.9
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	5.47	0.9764	FLA14.11
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	6.63	0.9629
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	6.70	0.9696
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	7.74	0.9640	FLA14.12
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	7.74	0.9553	Pt-ATEB1.3

Compare expression of checked genes

Potri.004G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.