Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 448 / 5e-158 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 398 / 4e-137 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 368 / 4e-126 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 361 / 6e-123 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 343 / 1e-115 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098900 [exp] 640 / 0 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 637 / 0 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 382 / 2e-130 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 380 / 2e-130 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 377 / 7e-129 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 369 / 1e-125 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 367 / 9e-125 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 234 / 3e-75 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012600 [exp] 540 / 0 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 524 / 0 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 518 / 0 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 511 / 0 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 377 / 1e-128 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 370 / 6e-126 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 364 / 9e-124 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 345 / 5e-116 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 239 / 6e-78 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 154 / 3e-45 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G117500.2 pacid=42795706 polypeptide=Potri.004G117500.2.p locus=Potri.004G117500 ID=Potri.004G117500.2.v4.1 annot-version=v4.1 ATGAATATCCTTTCGTTTCCCAACATGGTTTTTTCTCAAAACTTGCTTTTGATCATCACAGCTTCAGTGGCGGCGCTTGTTGGTGTTGCTGCAGCTTGCT CAAATGGAGAATGCAGGCTACATGATGAATGTTCATCGAATCAAGATTGTGAAGCTGGACTCTATTGCCTCGCTTGCCCGCTAGGGTTTCCAGGCACTAG ATGTGTTAGATCAACCATCACAGACCAATTCAAGCTTCTGAACAATTCTTTGCCTTTCAACAAATATGCATTTTTGGCGACTCACAATGCCTATGCTATT GATGGATACCCATCTCACACTAGAGTTCCTCGAATCACATTTACCAATCAAGAAGACAGCGTCATGGATCAGCTAAATAATGGAGCTCGAGCCTTGATGC TTGATACCTATGATTTTCGTGGAGATGTATGGTTATGCCATTCATTTAAAGGACAATGTCATGACTATACTGCATTTGGTCCAGCTATTGACACTCTAAG GGAAATCGAAGCTTTCTTATCTGCACATCCAGCAGAAATTGTTACGATAATCTTAGAAGATTATGTTCGAGCCCCAAATGGATTGACCAAGGTCTTCACT GATGCTGGCTTGATGAAATATTGGTTTCCTGTGACAAACATGCCTAAAGATGGTCAAGATTGGCCATTAGTTAATGACATGGTCCAGAACAACCAAAGGC TACTTGTTTTCACTTCAATTCAATCCAAGGAAGCAAGTGAAGGCATTGCTTACCAATGGAATTACATGGTTGAAAATCAATATGGGAATATTGGCATGAA AGCAGGAAGTTGCACTAATAGAAAGGAGTCACCTCCTCTTAATGACAAGAGTAGATCATTGGTGTTGGTAAATTACTTTAGATGTATTCCTATGAAGAAA CTCTCTTGTGAAGATAACTCAAGGAATCTCATAAATATGCTTCATACCTGTAATGGTGCTGCTGCCAATAGATGGGCAAATTTTGTTGCTGTAGATTATT ACAAGAGAAGTGAAGGAGGAGGATCATTTCAAGCCGTGGACCTGCTAAATGGGAAGCTATTATGTGGGTGTGATGATATCCATGCATGTGTGGAGGAATC GCAGGAGGAGTACAACAACAACAAGGGAACGCAAGTCGAGCTTCTACAGCAGGTACTTCCTACTCATGTGAGTAGTATTTAG
AA sequence Show only first row Show all	>Potri.004G117500.2 pacid=42795706 polypeptide=Potri.004G117500.2.p locus=Potri.004G117500 ID=Potri.004G117500.2.v4.1 annot-version=v4.1 MNILSFPNMVFSQNLLLIITASVAALVGVAAACSNGECRLHDECSSNQDCEAGLYCLACPLGFPGTRCVRSTITDQFKLLNNSLPFNKYAFLATHNAYAI DGYPSHTRVPRITFTNQEDSVMDQLNNGARALMLDTYDFRGDVWLCHSFKGQCHDYTAFGPAIDTLREIEAFLSAHPAEIVTIILEDYVRAPNGLTKVFT DAGLMKYWFPVTNMPKDGQDWPLVNDMVQNNQRLLVFTSIQSKEASEGIAYQWNYMVENQYGNIGMKAGSCTNRKESPPLNDKSRSLVLVNYFRCIPMKK LSCEDNSRNLINMLHTCNGAAANRWANFVAVDYYKRSEGGGSFQAVDLLNGKLLCGCDDIHACVEESQEEYNNNKGTQVELLQQVLPTHVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	0	1
					Potri.015G001700 [exp]	1.73	0.9639
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	2.23	0.9621
					Potri.007G088800 [exp]	2.44	0.9681
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	2.82	0.9637
AT5G14230			unknown protein		Potri.011G151300 [exp]	3.74	0.9417
AT5G18910			Protein kinase superfamily pro...		Potri.010G027301 [exp]	5.09	0.9091
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	5.47	0.9520
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	6.70	0.9366
AT5G36000			unknown protein		Potri.014G098300 [exp]	7.48	0.9249
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	8.66	0.9241

Compare expression of checked genes

Potri.004G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.