Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38970 655 / 0 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 650 / 0 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G05690 274 / 7e-87 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 263 / 1e-82 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 257 / 1e-80 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G45340 252 / 2e-78 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G36380 249 / 4e-77 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT4G19230 245 / 7e-76 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G50660 235 / 1e-71 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G19270 230 / 3e-70 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099000 [exp] 827 / 0 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.010G156800 [exp] 584 / 0 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.001G109100 [exp] 285 / 5e-91 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.008G067500 [exp] 282 / 3e-90 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G122500 [exp] 279 / 7e-89 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.010G189800 [exp] 279 / 9e-89 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 277 / 8e-88 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 264 / 7e-83 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.001G270300 [exp] 261 / 4e-82 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034377 [exp] 725 / 0 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10005075 [exp] 718 / 0 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 556 / 0 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014240 [exp] 544 / 0 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 279 / 2e-88 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 275 / 3e-87 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 267 / 4e-84 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 242 / 2e-74 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 240 / 2e-73 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 235 / 4e-72 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G117700.2 pacid=42794881 polypeptide=Potri.004G117700.2.p locus=Potri.004G117700 ID=Potri.004G117700.2.v4.1 annot-version=v4.1 ATGGCTGTTTTCTTCGTGGTTCTTGTGGTAGTTCTCTTTTTGTTCGGTATCTCCTCTGCTTTGTTGAGGTGGAATGAGGTGAGATATAGGAAGAAAGGGT TGCCTCCAGGCACCATGGGATGGCCAATCTTTGGAGAGACCACTGAGTTTCTAAAGCAAGGCCCGAACTTCATGAAAAATCAGAGCGCAAGGTATGGGAG TTTTTTCAAATCCCACATTCTGGGGTGTCCTACCATTGTTTCCATGGATCCAGAGCTCAACAGGTACATACTAATGAATGAGGCAAAAGGCCTTGTTCCT GGTTACCCTCAGTCCATGTTGGATATCTTAGGCAATTGCAACATTGCAGCAGTTCATGGCTCCACTCACAAGTACATGAGAGGGGCATTGTTATCCCTCA TCAGCCCCACCATGATCAGAGAACAACTTTTGCCAACAATTGATGAGTTCATGAGAACCCACCTCAGCGATTGGGATTCCAAAATTATTGACATTCAACA AATGACTAAAGAGATGGCCCTTCTTTCTGCACTCAAACAAATTGTTGGCATTGATTCTAGCTCAATATCTCAAGCATTCATGCCTGAGTTTTTCAAGCTG GTTTTAGGCACTTTGTCATTGCCGATTGACCTTCCTGGCACTAATTATACGCGTGGAGTCCAGGCGAGAAAAAAAATCATAAGCATGTTTAGGAAGGTAA TACAAGAGAGGAGGGCGTCAAAATTATCGCACCAGGACATGCTTGGTAAACTGATGAGAACTCAAGAAAATAAATACAAATTAACAGATGAAGAAATAAT TGATCAGATAATCACAATTCTGTACTCTGGCTACGAAACGGTTTCGACTACTTCAATGATGGCAGTCAAGTATTTGCATGATCACCCAACAGTCCTTCAA GAGCTAAGAAAAGAGCATTTGGCAGTAAGAGAAAAGAAAAGGCCTGAGGACCCAATTGATTTGAATGATCTTAAACCGATGCGTTTTACTCGTGCCGTGA TTCTTGAGACCTCAAGAATGGCGACGATAGTAAATGGGGTTTTGAGGAAGACTACTAGAGAAATGGAACTGAATGGATTTGTGATTCCAAAAGGATGGAG GATCTATGTTTACACAAGAGAGATAAACTATGATCCACATATATATCCTGACCCTTTATCCTTCAACCCATGGAGATGGCTGGACAAAAGTCTGGAGTCT CAAAACTATCTCTTCATTTTTGGAGGAGGTGCTAGGCAGTGTCCAGGGAAGGAGCTAGGAATAGCTGAAATCTCAACTTTCCTTCATTATTTCGTAACTC GATACAGATGGGAAGAGGTTGGAGGGGACACACTAATGAAATTTCCAAGAGTTGAAGCACCAAATGGGCTACACATAAGGGTCTCATCTCACTAA
AA sequence Show only first row Show all	>Potri.004G117700.2 pacid=42794881 polypeptide=Potri.004G117700.2.p locus=Potri.004G117700 ID=Potri.004G117700.2.v4.1 annot-version=v4.1 MAVFFVVLVVVLFLFGISSALLRWNEVRYRKKGLPPGTMGWPIFGETTEFLKQGPNFMKNQSARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVP GYPQSMLDILGNCNIAAVHGSTHKYMRGALLSLISPTMIREQLLPTIDEFMRTHLSDWDSKIIDIQQMTKEMALLSALKQIVGIDSSSISQAFMPEFFKL VLGTLSLPIDLPGTNYTRGVQARKKIISMFRKVIQERRASKLSHQDMLGKLMRTQENKYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPTVLQ ELRKEHLAVREKKRPEDPIDLNDLKPMRFTRAVILETSRMATIVNGVLRKTTREMELNGFVIPKGWRIYVYTREINYDPHIYPDPLSFNPWRWLDKSLES QNYLFIFGGGARQCPGKELGIAEISTFLHYFVTRYRWEEVGGDTLMKFPRVEAPNGLHIRVSSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Potri.004G117700 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Potri.001G247600 [exp]	2.64	0.9419
AT1G34470			Protein of unknown function (D...		Potri.009G047400 [exp]	3.46	0.8606
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	4.69	0.9062
					Potri.003G102300 [exp]	5.09	0.8305
AT1G63110			GPI transamidase subunit PIG-U...		Potri.001G109200 [exp]	6.00	0.8971
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	7.74	0.8958
AT4G02830			unknown protein		Potri.005G208800 [exp]	8.48	0.8931
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	11.61	0.8693
AT3G55060			unknown protein		Potri.008G047200 [exp]	12.04	0.8936
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	13.22	0.8826

Compare expression of checked genes

Potri.004G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.