Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02320 915 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT5G15810 910 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT3G56330 92 / 7e-20 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099200 [exp] 1099 / 0 AT3G02320 918 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.013G093500 [exp] 81 / 4e-16 AT3G56330 533 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020290 [exp] 932 / 0 AT3G02320 890 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10005696 [exp] 580 / 0 AT5G15810 549 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10030535 [exp] 82 / 2e-16 AT3G56330 548 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10029044 [exp] 75 / 6e-14 AT3G56330 508 / 5e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10012884 [exp] 42 / 0.0008 AT3G56330 431 / 4e-150 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02005 [poplar] [flax] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G117900.1 pacid=42794537 polypeptide=Potri.004G117900.1.p locus=Potri.004G117900 ID=Potri.004G117900.1.v4.1 annot-version=v4.1 ATGGCAGAAGATCTGCAAGATTATACCATTATTAAAGAAGGAGAGGCTGATATACTTATGAATGTTAAAAACCAAGTGTTTTTCAACAAAGCCCAGGTTA ACAACAGAGATTTGTCCATTGCTGTCCTGAGGACATTTATCTCCAAACGACAAGAGGAGCATGAAGCAATGTTGTCCAAAAGAACAAAATCAGCAAAAAA GGCATCTGAGAAGGATGCCTCTGGACCTGCTGTGGAAGAAGCATCTACCGGGTCTGCTTTGGATAATGAAAAATCTAATGGTGAGTGCGAAGTGCATGAA GAGATATCTCAAAATGAACCTTGCAGCATCTCAGAAGAATCAGTGAAGAACACAGAGGGAAATCATCATGGGGAGCTGAAACCACCAAAAGTTCTTGAGG CATTATCAGCTTCTGGGTTAAGAGCTCTACGATATGCTCGTGAGGTAGAAGGGATTGGTAAAGTTGTGGCCTTGGATAATGATAAAGCGTCAGTTGAAGC TTGTCAGAAGAATATTAAGTTCAATGGTTCGGTGGCAATTTCAAAGGTTGAATCACATCTTGCTGATGCTCGTGTATATATGCTCACTCACCCAAAAGAA TTTGATGTGGTTGATCTTGATCCTTATGGGTCACCTTCAGTATTTCTGGACTCGGCAGTTCAATCTGTTGTTGATGGCGGAATGCTGATGTGTACAGCAA CTGATATGGCAGTGCTTTGTGGAGGCAATGGCGAAGTTTGTTATTCGAAGTATGGTTCTTACCCTTTGAGAGGGAAATACTGCCACGAAATGGCTTTAAG GATCCTCCTTGCCTCCATTGAGAGTCATGCAAATCGCTACAAGCGTTACATTGTTCCTGTTCTGTCTGTTCAGATGAACTTTTATGTTCGGGTTTTTGTT CGCGTGTACACTTCTGCAAGTGCTATGAAAAACACTCCTCTTAAGCTCTCATATGTTTATCAGTGCATTGGTTGTGATTCTTATCATCTTCAGCCTATTG GGAGGACTATGTCCAAGGGTAGTAGTGTAAGACATCTTCCTGGGTTTGGTCCTGTTGTTTCCCAAGAGTGCAGTGATTGTGGAAAGAAATACAACATGGG TGGACCTATATGGTCTGCTCCCATTCATGATCAAGAATGGGTGACTTCTGTACTAGATGGTGTGAAATCAATGAAGGACCGATATCCTGCATATGATCGC ATCTCTGCTGTACTGACAACAATATCTGAGGAATTGCCTGATGTTCCACTCTTTTTGAGTCTGCACAACCTCTGTGCAACACTAAAATGCACCTCGCCTT CAGCAGTAATTTTCCGTTCTGCTGTGATCAATGCAGGATATCGTATCTCTGGGACACATGTGAATCCCCTGGGGCTAAAATCTGACGCCCCCATGGATGT CATTTGGGACATAATGAGATGCTGGGTGAAAAATCATCCTGTGAAAGCTCAAGCGCCTGATCAGCCAGGAAGCATTATACTCGCAAAAGAACCAGTCCTT CAAGCGAACTTTGCCCGAGCTGTTGCGTCTCTTAGCAAGGCACAAGCCAAAAAGGTTGCACGCTTCCTTCCAAATCCTGAAAGACATTGGGGGCCAAAAC TAAGGGCAGGTCGTCAAATTACCACCAAGCACATATCTCTTTTAGGTCCGGAGGCAGTGAATGGACATCTTAACCATGAAAATAGTGAAGAGACTAAAGC CAAACGTCCAAAAACAGGGGATACCAATGATCCAACCTCAAGCTCTTAA
AA sequence Show only first row Show all	>Potri.004G117900.1 pacid=42794537 polypeptide=Potri.004G117900.1.p locus=Potri.004G117900 ID=Potri.004G117900.1.v4.1 annot-version=v4.1 MAEDLQDYTIIKEGEADILMNVKNQVFFNKAQVNNRDLSIAVLRTFISKRQEEHEAMLSKRTKSAKKASEKDASGPAVEEASTGSALDNEKSNGECEVHE EISQNEPCSISEESVKNTEGNHHGELKPPKVLEALSASGLRALRYAREVEGIGKVVALDNDKASVEACQKNIKFNGSVAISKVESHLADARVYMLTHPKE FDVVDLDPYGSPSVFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMNFYVRVFV RVYTSASAMKNTPLKLSYVYQCIGCDSYHLQPIGRTMSKGSSVRHLPGFGPVVSQECSDCGKKYNMGGPIWSAPIHDQEWVTSVLDGVKSMKDRYPAYDR ISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAVIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKAQAPDQPGSIILAKEPVL QANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITTKHISLLGPEAVNGHLNHENSEETKAKRPKTGDTNDPTSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.004G117900 [exp]	0	1
AT1G71430			unknown protein		Potri.015G035700 [exp]	3.46	0.7028
AT1G56110		NOP56	homolog of nucleolar protein N...		Potri.012G095400 [exp]	8.18	0.7214	NOP56.2
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	10.39	0.7184
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.007G071100 [exp]	12.32	0.7210
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	25.39	0.6752
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	36.11	0.6545
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	41.13	0.6618
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.008G145600 [exp]	48.18	0.6165	THRRS.1
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	48.86	0.6404
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	48.96	0.6468

Compare expression of checked genes

Potri.004G117900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.