Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67450 79 / 3e-16 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G49930 78 / 4e-16 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G19580 71 / 3e-13 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G03510 69 / 1e-12 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 67 / 9e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 66 / 1e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G56200 64 / 1e-10 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT1G49900 64 / 2e-10 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT4G35280 62 / 2e-10 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G28200 62 / 2e-10 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091800 [exp] 765 / 0 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.008G094500 [exp] 76 / 2e-14 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.001G295500 [exp] 72 / 7e-14 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.010G159600 [exp] 72 / 4e-13 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 71 / 1e-12 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 68 / 2e-12 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.014G017300 [exp] 67 / 3e-12 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 68 / 4e-12 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 68 / 6e-12 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015740 [exp] 79 / 1e-15 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10036889 [exp] 70 / 4e-13 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 71 / 9e-13 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 69 / 2e-12 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 68 / 1e-11 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 67 / 2e-11 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10033798 [exp] 64 / 3e-11 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10022610 [exp] 64 / 4e-11 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 64 / 2e-10 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 63 / 3e-10 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G118100.1 pacid=42794719 polypeptide=Potri.004G118100.1.p locus=Potri.004G118100 ID=Potri.004G118100.1.v4.1 annot-version=v4.1 ATGAAGAAGAATCAAGAAAAGATGCATGTGTGCAAGTTATGCAACAAAAGTTTCTTGACTGGGAATATGTTGGGTGGTCACATGAGGATTCATGGAACTA GAAAATCTATTAAAGGAAATGTCAAGTTTGAAAGCAGCAACGTGGGTCCTGATAGTTGTGGCGTAAGAGAACAGCCCAAGAAATCTTGGAAATCCTCTGA CTTCAATCATGATGATAGTGTTTCAACGCAAGAAACAGTGAAATGTAGATTTTGTGGCAAAGAATTTGGTTCAGAAAAATCCCTTCATGGTCACATGAGG CATCACCCTGCTAAAGAAAGAAAAGGAGTTTACTGCGAAGAATGTGGAAGAGGGTTTCTGTCGTTAAAATCTTTAAGTAATCACAAGAGACTGCATCGTG AGAAGTTTACGATCTCAAGTGAACCAAGGGCTAGTTCTAGGCCTAATCTGGTTTCTATGGCTTTATCTGCTACGGAGGCTGTGAATCTTGTGAGAAGAAA GCGATCTAGTAGAATGAGGTACAAGATTACTCCTAATTCTTCTTTTTCTAGCTTGAATGAATCTGTTTCTGGTTTTGATATTGACCAAGAAGTTGAAGAG GCGGCTCTTACTTTGATTATGATGTCTAGGAGTGAATGTAATGGGTTTGATTCATTGTGTCGAAATAAGCGAATTGAGAGAGATGAGGATTGCCATGTTT TTCATGGTAATGAACTAGTCAAGCCAAAGAAACCCAGAGAGGATAATTTAGACTCCTGTGATTTGGATTCTATGACTAGTATACATGGATGTGGTGGTGA AGGTGATACTGAGACGGGGCGTGATGAGGAAAATCAAGTTAGATCGGAAGTTCCGGGAGAGACTACTTTCAAGGATATTGAATCCAAGAGCCCTCAATTG GATGATGAATCTGGAGTTGAATTTTGTCGTATTGATATAGAGAAGGGAGATCATGATGAAATGCTTACCACTTGCACTGAAGCTGAATCAAGTCAGGATC TGATGAGTGAAGTTGGATTGGATTGTGCTGGTTCGGGATTTGAGAAATCTATTCCAAGTAATCAAGCAAGGTTTGATGCTTGTAATTCTGAAATGGGAAA GGAATCTCGGTATCAGATGGAAGTAACCACTTCAAGTTATGATATCATGCAAGGTCCTAGCAAGAAAGGTGATTTCACGTGCAGAATCTGCAACAGGAAA TTCAACACTTATCAGTCACTTGGGGGTCACCAAACATTCCATAGAAAGAGTCCCATAGAGGTGAAGGTTGATAGCTGCGAAAAGGATATCCAGACTAATT TTTCTGCTGAAACTGAGGCTACAGGCAAACTTGAATGTATTCAGGAATTAGCAAAGCAGGAAAGTGATGAAGTTATTGTAAAAGATTGCGAGTCAAAGGA GGGTAAGGAGCACAAATGCTCAATCTGCTTTAAAGTTTTTCTATCTGGCCAAGCTTTGGGAGGTCACAAAAGGGCTCATTTTCTTAGAGCCAGAGAAGAA CAGAATACTGCAATGAAACAAGAGGTTCCCGGTATCTGTGATGCTCTCAATGTCGATGTCCCTTACACATTTGCTGCAGAGGCCAGTAATGATGTCCGGT GTGAGTCATGGTGTGTCCGGTGTGAGTCATGGTGGCCTGCAAATTCCCACAATCATGAGCCGCTGGTGGGTCATATAGCCAACTAA
AA sequence Show only first row Show all	>Potri.004G118100.1 pacid=42794719 polypeptide=Potri.004G118100.1.p locus=Potri.004G118100 ID=Potri.004G118100.1.v4.1 annot-version=v4.1 MKKNQEKMHVCKLCNKSFLTGNMLGGHMRIHGTRKSIKGNVKFESSNVGPDSCGVREQPKKSWKSSDFNHDDSVSTQETVKCRFCGKEFGSEKSLHGHMR HHPAKERKGVYCEECGRGFLSLKSLSNHKRLHREKFTISSEPRASSRPNLVSMALSATEAVNLVRRKRSSRMRYKITPNSSFSSLNESVSGFDIDQEVEE AALTLIMMSRSECNGFDSLCRNKRIERDEDCHVFHGNELVKPKKPREDNLDSCDLDSMTSIHGCGGEGDTETGRDEENQVRSEVPGETTFKDIESKSPQL DDESGVEFCRIDIEKGDHDEMLTTCTEAESSQDLMSEVGLDCAGSGFEKSIPSNQARFDACNSEMGKESRYQMEVTTSSYDIMQGPSKKGDFTCRICNRK FNTYQSLGGHQTFHRKSPIEVKVDSCEKDIQTNFSAETEATGKLECIQELAKQESDEVIVKDCESKEGKEHKCSICFKVFLSGQALGGHKRAHFLRAREE QNTAMKQEVPGICDALNVDVPYTFAAEASNDVRCESWCVRCESWWPANSHNHEPLVGHIAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	0	1
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	1.00	0.9014
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	6.92	0.8772
AT3G44850			Protein kinase superfamily pro...		Potri.009G151500 [exp]	8.71	0.7844
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.008G073300 [exp]	11.13	0.8562
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	11.83	0.8422	MYB.38,MYB090
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	17.54	0.8013
AT3G56250			unknown protein		Potri.013G083700 [exp]	18.54	0.8310
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	20.12	0.8308
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	20.39	0.8138
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	23.36	0.8314

Compare expression of checked genes

Potri.004G118100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.