Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 219 / 1e-65 unknown protein AT2G03470 175 / 1e-49 MYB ELM2 domain-containing protein (.1.2) AT1G13880 174 / 4e-49 ELM2 domain-containing protein (.1) AT4G11400 107 / 8e-25 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 91 / 3e-19 GYRB3 DNA GYRASE B3 (.1) AT2G46040 75 / 4e-14 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091900 [exp] 775 / 0 AT1G26580 218 / 2e-65 unknown protein Potri.010G159700 [exp] 224 / 3e-67 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 212 / 2e-62 AT1G26580 280 / 3e-88 unknown protein Potri.014G086700 [exp] 132 / 7e-33 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 130 / 2e-32 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 126 / 2e-32 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 124 / 2e-30 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000680 [exp] 227 / 4e-69 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 201 / 8e-60 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10036888 [exp] 179 / 2e-50 AT1G26580 253 / 1e-77 unknown protein Lus10037097 [exp] 176 / 4e-49 AT1G26580 249 / 4e-76 unknown protein Lus10032272 [exp] 127 / 5e-33 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 121 / 7e-30 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 101 / 1e-22 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 100 / 2e-22 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G118400.2 pacid=42794911 polypeptide=Potri.004G118400.2.p locus=Potri.004G118400 ID=Potri.004G118400.2.v4.1 annot-version=v4.1 ATGATTCAGAAACGTGCTTTTGCTGATGATAATTCATATGAGGTTGCTTGTAAGCACCCCAGGCAAATGGAGCATATTGATCAGTTTGCTCCTATATTTC CACTTGACAATGCTCACCAGAAACATCTAGTTTCAGGTGATGACACTTACAGAGAGTGTCAAGATGTAGGGAGGTCTGCAAGTGACTTGGTCACTGAATA TTCAAATGGAACCAGCAAGGAGTTTGAAACTGGTGACAATGGTTGTTTTCCGCAGTTTTTGTGGATCAGCAATGGGATTCTTGAAGCAGATAATTTATCA TTCTTCCCAGAATATTTTGATGATGGCCACCAGCTCAGGCCTTTACTTGAGCCTGATGAGGCCTGCTCATCTCTTGATTATCCTTTTCGGAAGTCGGTTT CAATTGGACCAGAGCATCAAGCTAATGTTCCAGAGTGGGGCTCACAGGGTTCAAGCACCTCCCTGAACCAGCTAGATGAGTCTAACCTTCAAGTTGCACA TGCACAGTCATCTAGCCCAGGTGTTATAATTGATGGTTGTTATGAGGAGAATCTGATGGGCACTTGTGTCCTTCCCATGCCTGAACTGGAAGTACCTGCA AATTATTGTTATGAAGCCACCAAAGGTGACTGTGGGTGCCCTGATGCAGGTTCTATCAGATGCATAAAACAACATGTCTCAGAAGCTAGGCTGAAACTTA GGGAAAACCTTGGGGAAGAGATATTTGAGGGGTTGGGGTTCTGTGATATGGGAGAAGTGGTTGCAAATAAATGGACTGTCGAGGAAGAGCAAATCTTCCG TGAGGTTGTCTTATCTAATCCTGTATCGTTAGGCAAAAACTTTTGGGACAATCTGCCGGTGGCATTTCCTTCCCGAACAAAAAAGGACCTTGTCAATTAT TATTTCAATGTATTCATGCTCCGGAAACGTGCTGAGCAGAACAGGTTTGACCCACTAAATATTGATAGTGATGATGATGAATGGCAAGGAATTGAGGGTG AAACAATAGAGAACGATGAGGATTCTGCAGTGGAATCCCTGGCTGGTCAAGATTCCTCCGCTTATTGTCAAGAGGACCATGCAGAGAATTGCAATGAATA TGTTGAGGATGAGGATGAGGATGAAGTTGTTGCTTCTCAAGATGGTGTTGATAATGTTGTCCATAAAGTTGCAACTGATGAGGAGTATGAGGGGGATGTA GATGATTTTTCAGGAGCACAAGTTGGGATTTACCATGGTGATCGTGCTGGTGATCTTGATCATAAACATTTCAGTCAAATTTCTGGGAAGAATGCAGATG ATTTCGATGTTCAAGATGATTCATGCACATCATATGAGCATTATCAAGACATCATTGATTGTTGTGGTCCACTTGATATAGGAGCTGATGGGAGACACTC TAGTTAA
AA sequence Show only first row Show all	>Potri.004G118400.2 pacid=42794911 polypeptide=Potri.004G118400.2.p locus=Potri.004G118400 ID=Potri.004G118400.2.v4.1 annot-version=v4.1 MIQKRAFADDNSYEVACKHPRQMEHIDQFAPIFPLDNAHQKHLVSGDDTYRECQDVGRSASDLVTEYSNGTSKEFETGDNGCFPQFLWISNGILEADNLS FFPEYFDDGHQLRPLLEPDEACSSLDYPFRKSVSIGPEHQANVPEWGSQGSSTSLNQLDESNLQVAHAQSSSPGVIIDGCYEENLMGTCVLPMPELEVPA NYCYEATKGDCGCPDAGSIRCIKQHVSEARLKLRENLGEEIFEGLGFCDMGEVVANKWTVEEEQIFREVVLSNPVSLGKNFWDNLPVAFPSRTKKDLVNY YFNVFMLRKRAEQNRFDPLNIDSDDDEWQGIEGETIENDEDSAVESLAGQDSSAYCQEDHAENCNEYVEDEDEDEVVASQDGVDNVVHKVATDEEYEGDV DDFSGAQVGIYHGDRAGDLDHKHFSQISGKNADDFDVQDDSCTSYEHYQDIIDCCGPLDIGADGRHSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26580			unknown protein		Potri.004G118400 [exp]	0	1
AT1G26580			unknown protein		Potri.017G091900 [exp]	4.47	0.7482
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	9.74	0.8234
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	11.66	0.7704	Pt-SCL1.1
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	17.02	0.7778
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	17.74	0.7566
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	18.97	0.7878
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	20.00	0.7563
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Potri.003G092200 [exp]	20.49	0.7876	ATMYC2.1
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	22.71	0.7230
AT5G59790			Domain of unknown function (DU...		Potri.001G235700 [exp]	24.00	0.7769

Compare expression of checked genes

Potri.004G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.