Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15490 879 / 0 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT3G29360 874 / 0 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT5G39320 870 / 0 UDP-glucose 6-dehydrogenase family protein (.1) AT1G26570 852 / 0 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT3G01010 253 / 9e-83 UDP-glucose/GDP-mannose dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092000 [exp] 933 / 0 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.010G159800 [exp] 875 / 0 AT5G15490 853 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.008G094300 [exp] 866 / 0 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034703 [exp] 870 / 0 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021626 [exp] 868 / 0 AT5G15490 875 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10026656 [exp] 861 / 0 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004656 [exp] 860 / 0 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026657 [exp] 853 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037096 [exp] 807 / 0 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10036887 [exp] 441 / 2e-155 AT3G29360 444 / 5e-157 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Lus10036886 [exp] 314 / 1e-105 AT5G15490 327 / 3e-111 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021639 [exp] 142 / 3e-41 AT1G26570 145 / 6e-43 UDP-glucose dehydrogenase 1 (.1) Lus10004657 [exp] 110 / 4e-29 AT5G15490 133 / 4e-38 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00984 [poplar] [flax] UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain CL0039 [poplar] [flax] HUP PF03720 [poplar] [flax] UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CL0063 [poplar] [flax] NADP_Rossmann PF03721 [poplar] [flax] UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G118600.1 pacid=42796015 polypeptide=Potri.004G118600.1.p locus=Potri.004G118600 ID=Potri.004G118600.1.v4.1 annot-version=v4.1 ATGGTGAAGATCTGTTGCATTGGAGCAGGGTATGTCGGTGGGCCTACAATGGCTGTCATCGCACTCAAGTGCCCGTCAATTGAAGTGGTGGTTGTTGACA TCTGGGAACCTAGGATTGCAGCCTGGAACAGTGACCAGCTCCCCATCTATGAGCCAGGCCTTTATGATGTGGTGAAGGAGTGCCGAGGCAGGAATCTCTT CTTCAGCAAAGATGTGGAGAAGCATGTCGCAGAGGCTGATATAGTTTTTGTTTCGGTCAACACCCCTACCAAAACTCAAGGTCTTGGAGCGGGCAAAGCT GCAGATCTGACGTACTGGGAGAGCGCAGCACGCACAATTGCTGATGTGTCCAAATCTGACAAAATCGTTGTTGAGAAATCAACAGTCCCAGTTAAAACTG CCGAGGCAATTGAAAAGATCTTGACCCACAACAGTAAGGGGATCAAATTCCAGATCCTCTCAAACCCTGAGTTCCTTGCAGAAGGAACTGCAATCGGTGA TCTGTTTCAACCTGATCGTGTCCTCATTGGAGGGAGGGAAACCCCAGAAGGCCAGAAGGCAATCCAAGCATTGAAGGATGTGTATGCTCATTGGGTTCCT GAAGACCGCATCCTAACCACCAACCTTTGGTCTGCAGAGCTGTCCAAGCTTGCTGCCAATGCCTTTTTGGCCCAAAGGATTTCCTCCGTTAATGCCATGT CAGCACTCTGTGAGGCAACTGGGGCTGATGTTGCCGAGGTGGCCTATGCTGTTGGAAAGGATTCAAGGATTGGTCCCAAGTTCTTGAATGCTAGTGTTGG TTTTGGTGGGTCCTGCTTCCAGAAGGATATTCTGAATCTTGTTTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCAGAGTACTGGAAACAAGTCATC AAGATCAATGATTACCAGAAGAGCCGATTTGTGAACCGTGTTGTTTCATCTATGTTTAACACAGTCTCTCAAAAGAAGATTGCCATTTTAGGGTTCGCTT TCAAGAAGGATACTGGCGACACTAGGGAGACCCCTGCCATTGATGTGTGCCAGGGACTGTTGGGAGACAAGGCTCTCTTGAGCATATATGATCCACAGGT CCAGAAAGAACATATTCAGAGGGATCTTATCATGAAAAAGTTTGATTGGGATCATCCTCTCCATCTCCAGCCGAAGAGTGCCAGCTCTGCTGTTGAGCAA GTGACTGTTACTTCTGATGCCTATGAGGCAACAAAGGAAGCCCATGGCGTTTGCATCTTGACAGAGTGGGATGAATTCAAGACTCTTGATTACAAGAAGA TATATGACAACATGCAGAAACCAGCTTTTGTGTTTGATGGAAGGAATGTTGTGAATGCAGATAAGCTGAGGGAGATTGGTTTCATTGTGTACTCCATTGG TAAGCCACTGGATGCATGGCTCAAGGACATGCCTGCTATCGCATAA
AA sequence Show only first row Show all	>Potri.004G118600.1 pacid=42796015 polypeptide=Potri.004G118600.1.p locus=Potri.004G118600 ID=Potri.004G118600.1.v4.1 annot-version=v4.1 MVKICCIGAGYVGGPTMAVIALKCPSIEVVVVDIWEPRIAAWNSDQLPIYEPGLYDVVKECRGRNLFFSKDVEKHVAEADIVFVSVNTPTKTQGLGAGKA ADLTYWESAARTIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIGDLFQPDRVLIGGRETPEGQKAIQALKDVYAHWVP EDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVAEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI KINDYQKSRFVNRVVSSMFNTVSQKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKALLSIYDPQVQKEHIQRDLIMKKFDWDHPLHLQPKSASSAVEQ VTVTSDAYEATKEAHGVCILTEWDEFKTLDYKKIYDNMQKPAFVFDGRNVVNADKLREIGFIVYSIGKPLDAWLKDMPAIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	0	1
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	1.00	0.9642
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	3.74	0.9619
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	5.91	0.9532
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	5.91	0.9496
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	6.24	0.9568	UXS1.1
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	7.21	0.9542
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	7.34	0.9521
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	7.74	0.9468	TUA2.1
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	7.93	0.9477
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	8.00	0.9418

Compare expression of checked genes

Potri.004G118600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.