Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15510 410 / 9e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 400 / 9e-135 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G37478 69 / 2e-13 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G03780 67 / 1e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT5G44270 47 / 1e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092100 [exp] 764 / 0 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G013100 [exp] 72 / 4e-13 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.017G144061 [exp] 67 / 7e-13 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.007G138600 [exp] 63 / 3e-10 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010706 [exp] 386 / 2e-129 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 360 / 2e-119 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10030650 [exp] 360 / 2e-119 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029190 [exp] 308 / 5e-99 AT5G15510 365 / 2e-121 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10020800 [exp] 59 / 1e-09 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007382 [exp] 57 / 3e-09 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10018608 [exp] 60 / 4e-09 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 56 / 1e-07 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 51 / 2e-06 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.004G118700.1 pacid=42795705 polypeptide=Potri.004G118700.1.p locus=Potri.004G118700 ID=Potri.004G118700.1.v4.1 annot-version=v4.1 ATGGAATTGAATACCAAGAATCCAAAATCGGCCACTCCGGTAAAAGACCGTCATGGGTTTCAATCAAAATTATCTGAGAATTCGAATCCAAACCTTTCCC ATTTAAGCCCTTGTTCAAAACCCACAAATTCTCCTTCAACAAAATCCCAAAAATCTGCCTCCAAGAACCCGACTTTGAATCCCAATCCAGCCATTTTTTC ACCCAGAAAAAAGATTAGGGAAAGAAGGTTTGTAGTGGCAAAAAAGAATTCGAAGAAGGAGACTTTGAATTCAAATCCAACAACTGTGGATTGTAAGTGC AAAGAGAGATATGGGGGCAGTGTAAAGAAGTGTTTGTGTTTGGCCTATGAGACATTAAGGGCTTCACAGGAGGAGTTCTTCAAGAACAAGAATGACGTTG AAGAGAAAGGTGAAACAGATAAAGAAAAGGCCTTTGATTATAAAGTTGGGAGAGAAGTTTCAGAGGAGGAGATAGAAGACCATTTAATGGATCAAAATCT TGATATTGAGGATAGGGAAGGATCAGATGCTCAATATTCCTGCGAAATTGAGAAATCGGGACAAATGGGTAGTTCTAAAATCAAGAGAAGGAGAAATAAA TTACTTGAAGAAGCAAGAGACAGTGCACCTGACAATGGGAAGGTGAAGCATTTGGTTGAGGCCTTCGAGAAGCTTTTTACCCTACCAAATCCGAAAGAAT CAGATAGGACTGAAGAGGAGGAGATAAAGGAGAATAGAAAGAAGGCAATGCAATGGGCTTTGCCTGGATTCCAGCTTCCTAAAGTGTTGCCTGATACTGA GTTCTCTTCTTCATTTTCATTGCCAGGATTTCAGCATGCTGAGGTATCTGAGACAAACGTCTCTTCTTCTTCATTCTGTCCATCTGGTTTCTTTTTGACT TCTGAGAATCTCGGTCTGGATACAAGGATTTCTATTTCCTCTTCATGGGATGGCAGTCAAGGCAGTAATTCTAGCAGGTCATCTAACGGAGGCAGGAGAA GCCGAAGAAATAGTGCCGAGTCAGGTGCAACAACCGGGGGGAGGAGATTGAAGAAGAAGCAGATTAAAATCACAAGCCAAAAGCCATTTAAGCTTAGGAC AGAACAAAGGGGAAGACTGAAGGAAGAGGAATTCACAAAGAAGATACAAGAAATAATGACGGAAGAGGAGAAGCTGCGGATTCCTATCGCACAAGGCCTT CCTTGGACAACAGATGAACCAGAGTGCCTAATCAAACCTCCGGTGAAAGAAAACACCAGGCCCATTGACCTGAAGCTCCGTAGTGATATTCGAGCTGTGG AGCGTGCTGACTTTGACCATCAGGTATCTGAGAAGATGAGCTTGATTGAGCAATACAAGATGGAAAGAGAGAGGCAACAAAAGTTGGCAGAAGAGGAAGA GGTACGCCGATTGAGAAAGGAGCTCGTTCCAAAAGCGCAGCCTATGCCCTATTTCGACCGGCCATTCATTCCCAGAAGGTCAATGAAGCATCCAACAATG GCGAACGAAGCAAAGCTCCGCAGACACAAGAAGATCAAGTTCTGTCAATCCTGGAACGATGTCAGCAGCTACAGTTATGATCAACAGAGCAACAAAGAAG ATAGAATAGGTGGTGGTTAG
AA sequence Show only first row Show all	>Potri.004G118700.1 pacid=42795705 polypeptide=Potri.004G118700.1.p locus=Potri.004G118700 ID=Potri.004G118700.1.v4.1 annot-version=v4.1 MELNTKNPKSATPVKDRHGFQSKLSENSNPNLSHLSPCSKPTNSPSTKSQKSASKNPTLNPNPAIFSPRKKIRERRFVVAKKNSKKETLNSNPTTVDCKC KERYGGSVKKCLCLAYETLRASQEEFFKNKNDVEEKGETDKEKAFDYKVGREVSEEEIEDHLMDQNLDIEDREGSDAQYSCEIEKSGQMGSSKIKRRRNK LLEEARDSAPDNGKVKHLVEAFEKLFTLPNPKESDRTEEEEIKENRKKAMQWALPGFQLPKVLPDTEFSSSFSLPGFQHAEVSETNVSSSSFCPSGFFLT SENLGLDTRISISSSWDGSQGSNSSRSSNGGRRSRRNSAESGATTGGRRLKKKQIKITSQKPFKLRTEQRGRLKEEEFTKKIQEIMTEEEKLRIPIAQGL PWTTDEPECLIKPPVKENTRPIDLKLRSDIRAVERADFDHQVSEKMSLIEQYKMERERQQKLAEEEEVRRLRKELVPKAQPMPYFDRPFIPRRSMKHPTM ANEAKLRRHKKIKFCQSWNDVSSYSYDQQSNKEDRIGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	0	1
AT2G16270			unknown protein		Potri.009G084400 [exp]	1.00	0.9845
AT5G15510			TPX2 (targeting protein for Xk...		Potri.017G092100 [exp]	1.41	0.9831
AT2G16270			unknown protein		Potri.001G289100 [exp]	1.73	0.9817
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	2.23	0.9800
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	4.47	0.9800	HIK.3
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	4.89	0.9786	SNAP30.2
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	5.47	0.9764
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	6.70	0.9772	ATCSLD5.2
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.010G202100 [exp]	6.78	0.9700
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Potri.005G033200 [exp]	6.92	0.9777

Compare expression of checked genes

Potri.004G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.