Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02090 822 / 0 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT1G51980 179 / 7e-50 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 175 / 1e-48 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT2G41790 62 / 5e-10 Insulinase (Peptidase family M16) family protein (.1) AT1G06900 62 / 8e-10 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 56 / 5e-08 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092400 [exp] 996 / 0 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.008G193200 [exp] 193 / 3e-55 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 182 / 6e-51 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.010G036700 [exp] 176 / 6e-49 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.013G154600 [exp] 63 / 3e-10 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 59 / 7e-09 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.006G050700 [exp] 55 / 1e-07 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004939 [exp] 857 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040886 [exp] 851 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 849 / 0 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 543 / 0 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10025839 [exp] 179 / 4e-50 AT1G51980 643 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 178 / 1e-49 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10035000 [exp] 178 / 1e-49 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004937 [exp] 142 / 3e-40 AT3G02090 151 / 6e-44 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 137 / 2e-34 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10018072 [exp] 56 / 6e-08 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Potri.004G118900.1 pacid=42794755 polypeptide=Potri.004G118900.1.p locus=Potri.004G118900 ID=Potri.004G118900.1.v4.1 annot-version=v4.1 ATGGCTTGGAAGCGCCTTCTAACCCTGTCTCGCCGCTCCCACAGACCCCTTTCCACCACCGCATCCAGGTCCTTTTCCGATGCCGCCGTCTCCACCGCCA GTCCCTTGACTTCACCAACCCCACCACCACCAACCGCCATGATCTACGACCGATTAGCTGAATCGGTCAAATCAAAGCTCAAAATCCTCGAAAACCCGGA CCCAAGATTCCTCAAATACGGGTCACCCCACCCAACTCTCAAAACGCATACCCATATCCTCTCTGCACCCGAGACCCGCATCACTACCCTCCCTAATGGT CTCCGTGTCGCTACAGAGTCGAATCTCGCTTCGAAGACCGCAACGGTCGGGGTTTGGATTGATGCCGGGTCGAGATTTGAGTCCGATGAGACAAATGGGA CTGCTCATTTTTTGGAACATATGATATTTAAGGGGACGGAGAAGAGGGGTGTGAGGGAGTTAGAAGAGGAGATTGAGAATATGGGAGGTCATTTGAATGC GTACACGAGTAGAGAACAGACTACATATTATGCTAAGGTTATGGATAAAGATGTCAATAAAGCCTTGGATATTTTGGCTGATATTTTGCAGAATTCTACT TTCGACGAGGAGCGGATGTCTAGGGAGAGGGACGTTATTACTATGGAAATGAAGGAGGTTGAGGGGCAAACCGAGGAAGTAATTTTTGACCATTTGCATG CAACTGCTTTCCAATACTCTCCTTTAGCTCGAACTATTCTGGGACCTGCTAAAAATATTGAAACAATATCCAGAGATGACATTCGGAACTATATACAAAC ACACTACACAGCTCCTAGAATGGTGATTGTCGCCTCAGGAGCTGTGAAGCATGAGGAATTTGTTGGAGAAGTAAAGAAGTTGTTTACTAAGTTATCATCT GATCAAACCACTGCTGCACAGTTAGTTGCCAAAGACCCTGCATTTTTCACTGGCTCTGAGGTTAGGATAATTGATGATGATATTCCTCTGGCACAATTTG CGGTTGCTTTTCAAGGAGCATCTTGGACAGATCCAGATTCCATTGCTTTGATGGTCATGCAGGCTATGTTGGGTTCTTGGAACAAGAGTGCTGGAGGTGG AAAGCACATGGGCTCTGAACTAGTTCAAAGGGTTGCCATTGATGAAATAGCAGAAAGTATGATGGCGTTCAACACAAACTACAAGGACACTGGTCTTTTT GGTGTTTATGCTGTTGCTAAGCCAGATTCCTTGGATGATTTAGCCTGGGCGATCATGCATGAGACAACTAAGTTATGCTATCGAGTTTCAGAAGCTGAGG TCACTCGTGCTTGTAACCAGTTGAAATCTTCCTTGCTACTTCACATTGATGGAACTAGTCCTGTAGCCGAAGATATTGGGCGCCAGCTACTTACTTATGG TCGAAGAATCCCATTTGCTGAACTGTTTGCAAGGATTGATGCTGTTGGTCCAAGCACTATAAAACGAGTTGCCAGCCGATTTATTCATGACCAGGATATT GCAATTGCTGCCATGGGTCCCATCCAAGGGTTGCCTGACTACAACTGGTTCAGACGCAGGACTTACTTAAACCGCTACTAG
AA sequence Show only first row Show all	>Potri.004G118900.1 pacid=42794755 polypeptide=Potri.004G118900.1.p locus=Potri.004G118900 ID=Potri.004G118900.1.v4.1 annot-version=v4.1 MAWKRLLTLSRRSHRPLSTTASRSFSDAAVSTASPLTSPTPPPPTAMIYDRLAESVKSKLKILENPDPRFLKYGSPHPTLKTHTHILSAPETRITTLPNG LRVATESNLASKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTEKRGVRELEEEIENMGGHLNAYTSREQTTYYAKVMDKDVNKALDILADILQNST FDEERMSRERDVITMEMKEVEGQTEEVIFDHLHATAFQYSPLARTILGPAKNIETISRDDIRNYIQTHYTAPRMVIVASGAVKHEEFVGEVKKLFTKLSS DQTTAAQLVAKDPAFFTGSEVRIIDDDIPLAQFAVAFQGASWTDPDSIALMVMQAMLGSWNKSAGGGKHMGSELVQRVAIDEIAESMMAFNTNYKDTGLF GVYAVAKPDSLDDLAWAIMHETTKLCYRVSEAEVTRACNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDAVGPSTIKRVASRFIHDQDI AIAAMGPIQGLPDYNWFRRRTYLNRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	0	1
AT3G02420			unknown protein		Potri.017G110600 [exp]	1.41	0.8338
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	1.73	0.7733
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	2.44	0.8129
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	7.07	0.7124	ATFYPP3.2
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	9.16	0.7141
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	11.48	0.6808	RAB11.15
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	11.66	0.6945	AJH1.3
AT5G42150			Glutathione S-transferase fami...		Potri.012G046600 [exp]	14.28	0.6996
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	15.42	0.6979
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	15.87	0.6876

Compare expression of checked genes

Potri.004G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.