Plant FIBer expression Database

Potri.004G118950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G172000
[exp]
105 / 8e-28 AT5G48310 1350 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016071
[exp]
42 / 4e-05 AT5G48310 1328 / 0.0 unknown protein
Lus10025189
[exp]
41 / 5e-05 AT5G48310 1258 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G118950.1 pacid=42796105 polypeptide=Potri.004G118950.1.p locus=Potri.004G118950 ID=Potri.004G118950.1.v4.1 annot-version=v4.1
ATGAGTGAGGAGGATGAATTTGAGGATGTGGGTCCTGCTGATTTTGATTACTTGAAGAAGCATGTGATGCAATGCTATCATAAAGATGATGAGGGGGAGA
TTTCTGGGGATGCTAGAAATAGATCTGCTACTAAAACTAAGTTGAATAGAGGGATTTTGGAGGAGGATTTGAAGATTGAATTGCTTAGAAGGCTCAAGAG
TACTACTCAAGCTGATGTTGATCTAGGGTTTAGCCCAGGAATAATTCGGTGGTCTCAGGTGGTGGTTTTTCACTTGGAGAGAAAGCTCAGCATGTGGTAT
TTTTCTCACACAGTGGGATAG
AA sequence
>Potri.004G118950.1 pacid=42796105 polypeptide=Potri.004G118950.1.p locus=Potri.004G118950 ID=Potri.004G118950.1.v4.1 annot-version=v4.1
MSEEDEFEDVGPADFDYLKKHVMQCYHKDDEGEISGDARNRSATKTKLNRGILEEDLKIELLRRLKSTTQADVDLGFSPGIIRWSQVVVFHLERKLSMWY
FSHTVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G118950
[exp]
0 1
AT3G22450 Ribosomal L18p/L5e family prot... Potri.008G153100
[exp]
2.23 0.9256
AT5G06540 Pentatricopeptide repeat (PPR)... Potri.016G065500
[exp]
6.63 0.9006
AT1G69350 Tetratricopeptide repeat (TPR)... Potri.008G093000
[exp]
11.22 0.8835
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G120900
[exp]
11.22 0.8615
AT3G25970 Pentatricopeptide repeat (PPR)... Potri.007G146800
[exp]
12.04 0.8784
AT2G29950 ELF4-L1 ELF4-like 1 (.1) Potri.001G251600
[exp]
16.30 0.8483
AT5G08310 Tetratricopeptide repeat (TPR)... Potri.005G090600
[exp]
16.43 0.8751
Potri.014G079500
[exp]
18.70 0.8188
AT1G16480 Tetratricopeptide repeat (TPR)... Potri.007G068600
[exp]
18.86 0.8826
AT2G22070 pentatricopeptide (PPR) repeat... Potri.007G085500
[exp]
19.26 0.8719

Potri.004G118950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.