Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15530 173 / 5e-53 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1) AT5G16390 168 / 9e-51 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092500 [exp] 376 / 2e-132 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.019G054400 [exp] 163 / 2e-48 AT5G16390 117 / 5e-31 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004868 [exp] 202 / 2e-63 AT5G16390 212 / 2e-67 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Lus10020619 [exp] 195 / 7e-61 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [poplar] [flax] Hybrid PF00364 [poplar] [flax] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Potri.004G119000.2 pacid=42794906 polypeptide=Potri.004G119000.2.p locus=Potri.004G119000 ID=Potri.004G119000.2.v4.1 annot-version=v4.1 ATGGCTTCAATCTCTGTTCCATGCCCCAAGACTATTTTGGTTGCCGCCGGTGTTGGATCCAATGCTCAAAATTCACAACCAAAGCCCATGATCTCTTTTC CCCGAGCACCAATTTCCAATCAGAACCCTCCTCTCTCTTTGGGATCTACATTCTCTGGTTTTGAGTGGCCTAACAGGAAGCAGCAAGCTGTTATGAAGGC ACAGGCGCAGCTGAATGAGGTTATGGTTGAGAAATCTTCAAATTCTGTACTGGTGGGGGACTCTGAATCCAAAGCGGCATCATCCGAGGGAAAGGATGAG CCCACAGAAAGTAAAATCCCTGACGTGTCATCCATTTCAGCATTTATGACACAAGTATCAGAACTTGTCAAACTTGTGGATTCAAGAGATATCACAGAGC TGCAATTGAAGCAATCAGGTTGTGAACTCATAATAAGGAAAAAGGAGGCTTTGCAGCAGTCAGAACCAGCAGCTCCTGTTCTTCCAATGCAATCTCCTTA CCCGCATGCAATGTTTCCTGCTCCACCAGTAGCTGCTCCTGCCCCGGCTCCAGCAAGTCCCTCTTCAGCTCCTGCCTTGCCCCCCCCTGCAAAGGCAAGT TCATCGTCTCATCCACCACTGAAATGCCCCATGGCTGGAACCTTTTATCGGAGTCCAGCTCCAGGTGAACCCCCATTTGTGAAGGTGGGGGATAAAGTGC AGAAAGGTCAAGTTGTTTGTATCATTGAGGCCATGAAGCTAATGAATGAAATTGAAGCTGATCAATCTGGAACCATTACCGAGATCGTGGCAGCGGATGG GAAACCAGTTAGTGTGGACACGCCTCTTTTTGTCATTGCGCCATGA
AA sequence Show only first row Show all	>Potri.004G119000.2 pacid=42794906 polypeptide=Potri.004G119000.2.p locus=Potri.004G119000 ID=Potri.004G119000.2.v4.1 annot-version=v4.1 MASISVPCPKTILVAAGVGSNAQNSQPKPMISFPRAPISNQNPPLSLGSTFSGFEWPNRKQQAVMKAQAQLNEVMVEKSSNSVLVGDSESKAASSEGKDE PTESKIPDVSSISAFMTQVSELVKLVDSRDITELQLKQSGCELIIRKKEALQQSEPAAPVLPMQSPYPHAMFPAPPVAAPAPAPASPSSAPALPPPAKAS SSSHPPLKCPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTITEIVAADGKPVSVDTPLFVIAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15530		BCCP2, CAC1-B	biotin carboxyl carrier protei...		Potri.004G119000 [exp]	0	1
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.017G092500 [exp]	1.00	0.8185
AT5G08415			Radical SAM superfamily protei...		Potri.013G136000 [exp]	4.69	0.7357
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	8.48	0.7441
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Potri.013G115400 [exp]	10.09	0.7054	PTP1.1
AT1G01730			unknown protein		Potri.002G158500 [exp]	12.16	0.6723
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	24.79	0.7242
					Potri.003G149300 [exp]	25.92	0.7701
AT5G64880			unknown protein		Potri.007G081700 [exp]	31.74	0.6740
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.010G142100 [exp]	35.21	0.7451
AT1G10020			Protein of unknown function (D...		Potri.002G112600 [exp]	35.91	0.7388

Compare expression of checked genes

Potri.004G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.