Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39250 347 / 6e-122 F-box family protein (.1) AT3G44326 43 / 0.0001 F-box family protein (.1) AT1G21760 41 / 0.0004 ATFBP7 F-box protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092800 [exp] 453 / 7e-164 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.001G452000 [exp] 45 / 2e-05 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.002G082500 [exp] 45 / 3e-05 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.005G178600 [exp] 44 / 5e-05 AT1G21760 479 / 6e-172 F-box protein 7 (.1) Potri.006G044801 [exp] 44 / 6e-05 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.002G122300 [exp] 41 / 0.0003 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 40 / 0.0008 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032969 [exp] 404 / 2e-144 AT5G39250 351 / 1e-123 F-box family protein (.1) Lus10013309 [exp] 44 / 6e-05 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042637 [exp] 42 / 0.0001 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10042716 [exp] 42 / 0.0004 AT1G69740 644 / 0.0 Aldolase superfamily protein (.1.2) Lus10026472 [exp] 41 / 0.0007 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10031031 [exp] 40 / 0.0008 AT5G04010 106 / 4e-27 F-box family protein (.1) Lus10029676 [exp] 40 / 0.001 AT1G21760 444 / 5e-156 F-box protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.004G119500.3 pacid=42796241 polypeptide=Potri.004G119500.3.p locus=Potri.004G119500 ID=Potri.004G119500.3.v4.1 annot-version=v4.1 ATGTCATATGAAGAAATTCTGAAGGTTGTTTTCCCTTTATTGGAGGGTGCAGACCTTGCTTCTTGCATGGCAGTGTGCAAACAGTGGAGAGATATGGCGC AAGATGATTACTTTTGGAAATGTGTTTGTGCCAAGAGATGGCCTTCCATTTGCAAGAGGTCAGATCCTCCAACTGTCACATACTACAAACTATACCAGAC CTTTTACAAGCGACAGCATCGACAAATCCTGCTTCCTCCTAGACTTTCCTTTGACAATTTGGAGTTCTTCATCGACATTTGGACTGATGATAAATTGATA TTTTCTGAAGTGGTCCCAGGCCCTGTTCTGCACACTGGAATCAAAAGCCCACCTCCTGGAATTTGTGATAGGCTTAGATTTCAGCTTGAAGGCCCTGATT GTAAGATGACTCTACCTGTTGAGCCGAGATTCAAAGTCCCTTTAGGCGAGACTGTAAGTGTTTCAGTGCTTGTGGGGCGGAAGGATTCCAATAGGGTTGC TTGCATAATCAATAAATCTGTCTTTGATTATATAGATCGGACATCCTATAGGGCCATGGCATTTGACTATCTTGGCCTCTCACCAGCCCACCCTTTTGTT CCAGGAATCCGGGCTTGGATTTCTTTGCTATTCATGGATGATAGAAATGACAGTGTCATTGATGTCTTTGGGATTGAAATGGATTTTTGTGATGCTGCAA AATCCAGGGACGAGGTTTTGTGGCTGCTTGACATACTTGATTGGAAGTGA
AA sequence Show only first row Show all	>Potri.004G119500.3 pacid=42796241 polypeptide=Potri.004G119500.3.p locus=Potri.004G119500 ID=Potri.004G119500.3.v4.1 annot-version=v4.1 MSYEEILKVVFPLLEGADLASCMAVCKQWRDMAQDDYFWKCVCAKRWPSICKRSDPPTVTYYKLYQTFYKRQHRQILLPPRLSFDNLEFFIDIWTDDKLI FSEVVPGPVLHTGIKSPPPGICDRLRFQLEGPDCKMTLPVEPRFKVPLGETVSVSVLVGRKDSNRVACIINKSVFDYIDRTSYRAMAFDYLGLSPAHPFV PGIRAWISLLFMDDRNDSVIDVFGIEMDFCDAAKSRDEVLWLLDILDWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39250			F-box family protein (.1)		Potri.004G119500 [exp]	0	1
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.008G039100 [exp]	4.12	0.7850
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	14.31	0.7145
AT3G43740			Leucine-rich repeat (LRR) fami...		Potri.009G090700 [exp]	16.73	0.7157
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.002G173800 [exp]	20.04	0.7165
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Potri.001G347700 [exp]	23.36	0.6905	PtrcGrx_C2
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.016G084800 [exp]	25.07	0.6818	APX1.1
AT1G02816			Protein of unknown function, D...		Potri.002G203400 [exp]	30.46	0.6703
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.014G060300 [exp]	31.30	0.6775
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.004G204700 [exp]	32.00	0.6673
AT5G65300			unknown protein		Potri.007G097000 [exp]	36.00	0.6935

Compare expression of checked genes

Potri.004G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.