Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39240 60 / 5e-13 unknown protein AT3G29370 59 / 7e-13 P1R3 P1R3, unknown protein AT4G30410 41 / 3e-05 sequence-specific DNA binding transcription factors (.1.2) AT2G43060 37 / 0.0008 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093000 [exp] 115 / 8e-35 AT5G39240 64 / 3e-14 unknown protein Potri.014G118300 [exp] 39 / 7e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G193300 [exp] 38 / 0.0003 AT2G47270 79 / 5e-20 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G060100 [exp] 37 / 0.0005 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.005G201500 [exp] 37 / 0.0005 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G119600.1 pacid=42795922 polypeptide=Potri.004G119600.1.p locus=Potri.004G119600 ID=Potri.004G119600.1.v4.1 annot-version=v4.1 ATGAGTTCAACTCTAAAAAAGTCCAAGGTTTCACTAGGAAGAACGGAAAGAAGAAGAAGAAGAAGACCACATGGACGTTCTTGCAGAGCTCAAAGAAGCA TTTGCAGTGGTGGGTTCGTGACAAGCCCCAACAAGGTATCGGACAAGATGGAGGCTCTCAAGAACCTCATTCCAGCTACCCATAATGGAGAGGTAAAAGC TGACCAGTTGTTCCAAGAAACTGCTGATTATATTGTCCTCTTGAGGACCCAAGTTCTTGTATTGAAGGGTCTGATTGACTTTTATGGATCCAGTACCGAA AGAGACAATTAA
AA sequence Show only first row Show all	>Potri.004G119600.1 pacid=42795922 polypeptide=Potri.004G119600.1.p locus=Potri.004G119600 ID=Potri.004G119600.1.v4.1 annot-version=v4.1 MSSTLKKSKVSLGRTERRRRRRPHGRSCRAQRSICSGGFVTSPNKVSDKMEALKNLIPATHNGEVKADQLFQETADYIVLLRTQVLVLKGLIDFYGSSTE RDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39240			unknown protein		Potri.004G119600 [exp]	0	1
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	1.73	0.9975
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	1.73	0.9968
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	2.44	0.9972
					Potri.009G070201 [exp]	3.60	0.9904
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	4.89	0.9944
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	5.47	0.9951
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094000 [exp]	6.00	0.9920
AT4G19430			unknown protein		Potri.003G105900 [exp]	6.32	0.9919
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	6.48	0.9933
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	7.74	0.9909

Compare expression of checked genes

Potri.004G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.