Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 230 / 6e-70 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 228 / 2e-69 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 226 / 2e-68 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 222 / 4e-67 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT3G22250 218 / 9e-66 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 218 / 1e-65 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 215 / 3e-64 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G05675 211 / 5e-63 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 210 / 2e-62 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 583 / 0 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 583 / 0 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 388 / 1e-131 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 370 / 1e-124 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 246 / 2e-76 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073800 [exp] 243 / 5e-75 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 243 / 5e-75 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.002G098400 [exp] 239 / 1e-73 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.015G071900 [exp] 238 / 2e-73 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034699 [exp] 356 / 8e-119 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 351 / 6e-117 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 344 / 4e-114 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 343 / 4e-114 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 340 / 9e-113 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 338 / 5e-112 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 337 / 1e-111 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 335 / 1e-110 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 328 / 4e-108 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 320 / 3e-105 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G119700.1 pacid=42796066 polypeptide=Potri.004G119700.1.p locus=Potri.004G119700 ID=Potri.004G119700.1.v4.1 annot-version=v4.1 ATGGGCAATCCACATATCCTAGTTATACCTTATCCAGAGCAAGGCCATATAATTCCTTTACTGGAGCTTTCACACTGCTTGGCTAGTTATGGGTTCAAAA TCACATTTGTAAACACACAACACAATGAAGAGCGTATCAGGAATGCATCGGGTTTGAAAGTGAAAGGTGATACAGAAGATTTGATACATCTAGTCTCGTT TTCTGATGGTCTGGAATCTGGGGAGGATAGGTTTAAGCCAGGGAAAAGATCTGAAACGTTCCTGACGCTTATGCCAGGAAAAATAGAGGAGTTAATAGAA AGTATTAATGCATCGGACAGTGACAAGATCAGTTGCATCCTTGCTGATCAGACTATTGGATGGGCCTTGGAACTTGCAGAGAAGAAGGGGATCAAGCGAG CTGCCTTTTGTTCTGCTGCAGCTGCAATGTTAGTCCAGGGATTCAGCATCCCAAAACTGATTGAAGACGGAATCATAGACAAGGAAGGAACCCCCGTGAA AATGCAGACAATTATGCTCTCACCAACCATGCCTGCAATAAACACAGCACAACTCGTATGGGCTTGTCTTGGCAACATGAATTCCCAGAAATTATTTTTT GCACTAATGGTTAAGAACATCCAATCCATGAAGCTAACAGAATGGCTGCTATGCAACTCAGCTTATGAACTTGAGCCTGGAGCATTCAACTTGTCTCCAC ACATCATTCCAATAGGACCACTTGTAGCTAGCAACAGACTTGGAGATTCAGTAGGAAGCTTCTGGCAAGAGGACTCAACATGTTTGGAATGGCTAGATCA GCAGCCACCACAATCAGTCATCTATCTTGCTTTTGGAAGTTCAACTGTTCTAAGCCCTACTCAGTTCCAAGAATTGGCTCTGGGATTGGATCTGACTAAT AGACCATTCTTGTGGGTTTCAAGGCCAGATATAACCAATGGAACACCTAATGCTTTTTTACAAGAATTTAAAGACAGAGTGAGCCCTCAGGGTAAGATAG TGACTTGGGCACCACAACAAAATGTGCTGGCACACCCTTCTGTTGCTTGTTTTGTGAGTCACTGTGGATGGAACTCTGTCATTGAAGGTGTATGCAATGG AGTACCTTTCCTGTGCTGGCCTTACTTTGCTGACCAGTTCTTTAATCAAAGCTACATTTGCGATATTTGGAAGGTTGGATTAGGATTTAACAAGGATGAA CATGGGATAATAACAAGAGGAGAAATCAAGAACAGGGTGGAGCAACTGTTGAGTAATGAAGAGTTTAAAGCAACATCATTGGAACTCAAGGAAACTGTCA TGAATAGTATCAAAGAAGGTGGTAGTTCTTATCAAAATTTCAAGAGATTTATTGAATGGATCAAGGCTTAG
AA sequence Show only first row Show all	>Potri.004G119700.1 pacid=42796066 polypeptide=Potri.004G119700.1.p locus=Potri.004G119700 ID=Potri.004G119700.1.v4.1 annot-version=v4.1 MGNPHILVIPYPEQGHIIPLLELSHCLASYGFKITFVNTQHNEERIRNASGLKVKGDTEDLIHLVSFSDGLESGEDRFKPGKRSETFLTLMPGKIEELIE SINASDSDKISCILADQTIGWALELAEKKGIKRAAFCSAAAAMLVQGFSIPKLIEDGIIDKEGTPVKMQTIMLSPTMPAINTAQLVWACLGNMNSQKLFF ALMVKNIQSMKLTEWLLCNSAYELEPGAFNLSPHIIPIGPLVASNRLGDSVGSFWQEDSTCLEWLDQQPPQSVIYLAFGSSTVLSPTQFQELALGLDLTN RPFLWVSRPDITNGTPNAFLQEFKDRVSPQGKIVTWAPQQNVLAHPSVACFVSHCGWNSVIEGVCNGVPFLCWPYFADQFFNQSYICDIWKVGLGFNKDE HGIITRGEIKNRVEQLLSNEEFKATSLELKETVMNSIKEGGSSYQNFKRFIEWIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02100			UDP-Glycosyltransferase superf...		Potri.004G119700 [exp]	0	1
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	1.41	0.9799
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.010G247400 [exp]	5.29	0.9490
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	5.83	0.9749	Pt-CYP93.2
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	7.41	0.9637
AT5G39970			catalytics (.1)		Potri.017G075800 [exp]	7.74	0.9658
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	8.94	0.9614
					Potri.003G103100 [exp]	12.88	0.9255
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	14.69	0.9623
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G012800 [exp]	17.49	0.9546
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	17.66	0.9596

Compare expression of checked genes

Potri.004G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.