Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02110 756 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 602 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 562 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 547 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G07990 514 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 503 / 1e-176 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 483 / 2e-168 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 451 / 8e-156 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G63470 449 / 7e-155 SCPL40 serine carboxypeptidase-like 40 (.1) AT2G35770 434 / 2e-149 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094100 [exp] 855 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.006G183200 [exp] 622 / 0 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 609 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.008G041800 [exp] 523 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 519 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 506 / 1e-177 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.008G041700 [exp] 491 / 5e-172 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 485 / 2e-169 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.005G091700 [exp] 459 / 4e-159 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015382 [exp] 773 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10015489 [exp] 612 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 608 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10023505 [exp] 509 / 6e-179 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 504 / 5e-177 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 484 / 4e-168 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10010190 [exp] 442 / 3e-152 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 440 / 3e-151 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 418 / 5e-143 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010191 [exp] 416 / 5e-142 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.004G120100.2 pacid=42795626 polypeptide=Potri.004G120100.2.p locus=Potri.004G120100 ID=Potri.004G120100.2.v4.1 annot-version=v4.1 ATGGTCATGGCTGAAAAACAGATCTTTGTTTCCATGGTCCTTGTTTTGCTTTTGGTTGTTTTTTCTAGTGCTAGCCATCACCATGCAGTAAATGAAGTAG AAGAAGAAGCAGACAGGATATCTTCACTTCCTGGCCAGCCTAAGGTCTCTTTTCAACAATTCTCTGGCTATGTTACTGTTAACAAAGTTGTTGGTAGAGC TCTCTTCTACTGGCTCACTGAGGCTGTCCATGACCCCTCGTCTAAACCCTTGGTTGTTTGGCTCAATGGAGGTCCTGGTTGCTCTTCTGTGGCATATGGT GCTTCTGAGGAAATAGGGCCATTTAGAATCAACAAGACTGCCTCAGGATTGTACCTTAACAAGTTCTCATGGAACTCTGTGGCCAACCTCTTGTTCCTGG AAACTCCTGCTGGTGTTGGCTTCTCTTACAGCAATCGGTCCTCTGATTTGCTTGATACTGGCGATATTCGCACTGCCAAGGACTCGTTGGAATTTCTGGT TGGATGGATGAATCGATTCCCACGATACAAGCACCGAGAAGTATATCTTACTGGAGAGAGTTATGCAGGCCACTATGTTCCTCAGCTGGCTAGAGAAATT ATGATGTACAACAAAAGGTCCAAGCATCCAATAAATCTTAAAGGATTCATGGTTGGGAATGCAGTTACGGACAACTATTATGATAACCTTGGAACAGTGA CGTACTGGTGGAGCCATGCGATGATCTCTGATAAAACATATCGGCAGCTCATCAACACGTGCGATTTTCGAAGGCAGAAGGAATCAGTCGAATGTGAATC ATTGTATAGTTATGCCATGGATCAAGAATTTGGAAACATTGATCAGTACAACATTTATGCACCCCCTTGTAACAACTCTGATGGTAGCACCTCTACTCAT CAGAGTATCCGATTGCCTCACCATCCCTACAAGGTTGTCAGGCCATTGTCTGGCTATGATCCCTGTACTGAAAAATATGCTGAGATTTATTACAATAGAC CAGATGTGCAGAAAGCACTCCATGCCAATGTGACCAAAACTCCTTACAAGTGGACAGCTTGCAGTGAAGTACTAAATCGTAACTGGAACGACACGGATGT TTCGGTTCTCCCAATTTACCGAGAAATGCTTGCTAGTGGATTGAGGATTTGGGTATTCAGTGGCGACGTCGACTCAGTTGTGCCAGTTACAGCTACTAGA TACTCCCTTGCTCAACTTAAATTAGCGACAAAAATTCCATGGCATCCTTGGTATGTTAAGAAGCAGGTGGGAGGGTGGACAGAGGTATATGAAGGACTGA CATTTGCAACAGTGAGAGGGGCTGGTCATGAAGTGCCACTTTTCAAGCCAAGAGCAGCCCTTCAGCTATTCAAATCATTTTTGAAAGGGCAGCCCCTTCC CAAGTCTTGA
AA sequence Show only first row Show all	>Potri.004G120100.2 pacid=42795626 polypeptide=Potri.004G120100.2.p locus=Potri.004G120100 ID=Potri.004G120100.2.v4.1 annot-version=v4.1 MVMAEKQIFVSMVLVLLLVVFSSASHHHAVNEVEEEADRISSLPGQPKVSFQQFSGYVTVNKVVGRALFYWLTEAVHDPSSKPLVVWLNGGPGCSSVAYG ASEEIGPFRINKTASGLYLNKFSWNSVANLLFLETPAGVGFSYSNRSSDLLDTGDIRTAKDSLEFLVGWMNRFPRYKHREVYLTGESYAGHYVPQLAREI MMYNKRSKHPINLKGFMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYRQLINTCDFRRQKESVECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSTSTH QSIRLPHHPYKVVRPLSGYDPCTEKYAEIYYNRPDVQKALHANVTKTPYKWTACSEVLNRNWNDTDVSVLPIYREMLASGLRIWVFSGDVDSVVPVTATR YSLAQLKLATKIPWHPWYVKKQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLKGQPLPKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.004G120100 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	7.34	0.9294
					Potri.007G097700 [exp]	9.00	0.9242
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	10.95	0.9192
AT3G22640		PAP85	cupin family protein (.1)		Potri.006G002500 [exp]	12.44	0.9202
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	13.11	0.9212
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	13.49	0.9164
					Potri.016G139350 [exp]	13.56	0.9152
					Potri.002G252400 [exp]	13.74	0.9119
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.010G177100 [exp]	15.71	0.9078	AS2.1
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	18.16	0.9095

Compare expression of checked genes

Potri.004G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.