Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39210 132 / 4e-40 CRR7 chlororespiratory reduction 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015380 [exp] 133 / 2e-40 AT5G39210 130 / 2e-39 chlororespiratory reduction 7 (.1) Lus10032982 [exp] 104 / 2e-29 AT5G39210 101 / 1e-28 chlororespiratory reduction 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12095 [poplar] [flax] CRR7 Protein CHLORORESPIRATORY REDUCTION 7
Representative CDS sequence Show only first row Show all	>Potri.004G120300.1 pacid=42796243 polypeptide=Potri.004G120300.1.p locus=Potri.004G120300 ID=Potri.004G120300.1.v4.1 annot-version=v4.1 ATGCTGAGAGTTCCGGGCAGTGCTTTGTCAATGGAGATAGCCTTCCACAAGCAGCTACTGATTACTAAAGTTGACGGTCTTGACTGTGACAATATAACGG GAAAGAGAAGTTCTGCACCATTTGTCCAAGCGAGTTCAGCAGACATTGCTGACAGTTCTTCTTTTATCCATCTCAAACTCCCCAATTTGATGAACCGACG TGGCAATTCTGTGAAGGTTTTTGGGGTGAGGAGGAGAAGGATACATCAGAAAACGGGAACTTATGTCCTTTTAGAACCTGGAGAAGATGAGAAATTTGTT TCTGAAGAAGAATTGAAGGCTGTACTTAAAGGCTATCTTGAGAATTGGCCAAGACCGACCTTGCCGCTAGACCTAGCAAAATTTGAAACCGTCGATGATG CTGCTTCTTTCCTGGTAAGTTCTGTTTGTGAACTTGAAATTGATGGAGATGTTGGTTCAGTCCAATGGTATGAAGTTCGTTTGGAGTGA
AA sequence Show only first row Show all	>Potri.004G120300.1 pacid=42796243 polypeptide=Potri.004G120300.1.p locus=Potri.004G120300 ID=Potri.004G120300.1.v4.1 annot-version=v4.1 MLRVPGSALSMEIAFHKQLLITKVDGLDCDNITGKRSSAPFVQASSADIADSSSFIHLKLPNLMNRRGNSVKVFGVRRRRIHQKTGTYVLLEPGEDEKFV SEEELKAVLKGYLENWPRPTLPLDLAKFETVDDAASFLVSSVCELEIDGDVGSVQWYEVRLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	0	1
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	1.00	0.9917
AT2G41120			unknown protein		Potri.006G025200 [exp]	1.41	0.9827
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	4.58	0.9816	SK1
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Potri.001G068300 [exp]	5.29	0.9805
AT3G19810			Protein of unknown function (D...		Potri.010G170100 [exp]	7.14	0.9736
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	7.74	0.9803
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	8.77	0.9796	Pt-HHOA.1
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	9.16	0.9753
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	9.48	0.9658
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	9.48	0.9800

Compare expression of checked genes

Potri.004G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.