Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39200 68 / 2e-13 unknown protein AT2G03630 64 / 5e-12 unknown protein AT3G02125 63 / 3e-11 unknown protein AT1G74220 54 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094300 [exp] 306 / 1e-104 AT5G39200 70 / 3e-14 unknown protein Potri.010G158000 [exp] 80 / 8e-17 AT2G03630 108 / 7e-27 unknown protein Potri.015G057200 [exp] 66 / 3e-12 AT1G74220 77 / 9e-16 unknown protein Potri.012G061700 [exp] 64 / 2e-11 AT1G74220 91 / 1e-20 unknown protein Potri.008G096300 [exp] 60 / 4e-10 AT2G03630 91 / 2e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029645 [exp] 79 / 7e-17 AT2G03630 62 / 4e-11 unknown protein Lus10032983 [exp] 71 / 8e-14 AT3G02125 59 / 6e-10 unknown protein Lus10021153 [exp] 67 / 3e-12 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10037082 [exp] 55 / 3e-08 AT2G03630 82 / 2e-17 unknown protein Lus10036900 [exp] 54 / 5e-08 AT2G03630 82 / 3e-17 unknown protein Lus10026665 [exp] 54 / 8e-08 AT2G03630 73 / 2e-14 unknown protein Lus10004647 [exp] 49 / 2e-06 AT2G03630 62 / 6e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G120400.1 pacid=42793976 polypeptide=Potri.004G120400.1.p locus=Potri.004G120400 ID=Potri.004G120400.1.v4.1 annot-version=v4.1 ATGGCTGACGAAAATGCTATTCCTGCTCTCAAAAGTTCAAGTTCTTGCGCATCATCAGAATCTTCAGCAAGATCTGGTGGGGTCGAAAAGGATGATCCTG CCAATCCCTTTATCGAACCAAACCAAGCAGGTGTTAAATCATCACGAGGACCCTTATTTCCAGCAGAAGTTTCCAGCCACAATCTGGTTATTAGCACACA GCTAGTGCCCCCACCATCGCCTCAAAGTAATGTGACGCCAGGCTATGATCCAAATCGGCTCTCATCATCCATTTTTGCCAAGCCTAGTAATCCTGCCGAG TGGAGCGCCACTTCAAATGAATCGTTGTTCAGCATTTACATGGGAAATAGTAGCTTCTCAAGAGATAATGCTTTCATGTTATATAAATCTGGAGAACTCC CCAAGTTTGAAGAGACAAGCAATCCTTTACCCAGCTTGAGTCCTGTCATTGAAGTAGAGAGCAATGATAGAAAGAATAAAAATATATCGATAGAAACAGA GGTGAAAGAAAAAGAATCGTCTGATTCTGAAGAAATGGAACCTAAATCAACAGCTGATATCAATACCAAAAAGGAGGTTCTGGTTGCAACAGAGAAAATT AGCTGTCAGGAAAAGATGCCTCCTGTCGAGGAGGTTCAAGTCTCCTTCTCCAGTAGTAACAGATCATTTCAATTCCCACTATTCGATTCTACCTCAGGAA GGACAACTTCTTTCCATGAGGTGACGGGGAAGCATCCCTCGGAGAAGCACTCGCAACAGGAGCCACCAAAGCCTGCAGAAACCACCCCTGGAACAAACCC TAAGGCTGCGGGAAATAGTTGGTTTTCTTGCTTCTCCTGCTGCTCACTTGGATGTTAA
AA sequence Show only first row Show all	>Potri.004G120400.1 pacid=42793976 polypeptide=Potri.004G120400.1.p locus=Potri.004G120400 ID=Potri.004G120400.1.v4.1 annot-version=v4.1 MADENAIPALKSSSSCASSESSARSGGVEKDDPANPFIEPNQAGVKSSRGPLFPAEVSSHNLVISTQLVPPPSPQSNVTPGYDPNRLSSSIFAKPSNPAE WSATSNESLFSIYMGNSSFSRDNAFMLYKSGELPKFEETSNPLPSLSPVIEVESNDRKNKNISIETEVKEKESSDSEEMEPKSTADINTKKEVLVATEKI SCQEKMPPVEEVQVSFSSSNRSFQFPLFDSTSGRTTSFHEVTGKHPSEKHSQQEPPKPAETTPGTNPKAAGNSWFSCFSCCSLGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39200			unknown protein		Potri.004G120400 [exp]	0	1
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.008G089200 [exp]	11.04	0.8982
AT5G38210			Protein kinase family protein ...		Potri.004G096900 [exp]	15.36	0.7478
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023020 [exp]	31.93	0.8643
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.005G170600 [exp]	41.29	0.8101
					Potri.002G184550 [exp]	42.41	0.8623
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	45.34	0.8623
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	50.69	0.8623
					Potri.011G073141 [exp]	57.80	0.8623
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Potri.010G046600 [exp]	63.16	0.8622
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	64.49	0.8621

Compare expression of checked genes

Potri.004G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.