Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 1375 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 503 / 3e-166 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 422 / 6e-129 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 389 / 1e-116 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G73080 380 / 1e-113 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT5G65700 348 / 4e-103 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 352 / 9e-103 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 340 / 5e-100 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 337 / 3e-99 ERL1 ERECTA-like 1 (.1.2) AT2G26330 330 / 2e-96 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094400 [exp] 1924 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 1213 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 786 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G009300 [exp] 387 / 6e-116 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 382 / 4e-115 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.001G053400 [exp] 377 / 1e-112 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 368 / 3e-109 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.004G065400 [exp] 348 / 9e-102 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G129100 [exp] 343 / 1e-99 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007206 [exp] 946 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 939 / 0 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 554 / 0 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 546 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 537 / 5e-178 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 531 / 2e-175 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 524 / 1e-172 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 408 / 5e-126 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10039030 [exp] 355 / 2e-104 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10039641 [exp] 337 / 2e-98 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G120500.1 pacid=42795751 polypeptide=Potri.004G120500.1.p locus=Potri.004G120500 ID=Potri.004G120500.1.v4.1 annot-version=v4.1 ATGGGTTCCTCTTGTTTTCCTTCTTCAGTTATCAAGTGGCAAGCCTTCACAAAACTGAAACTTTTCTCTCTCTTCTGCGCCTTCTCGCTGTCCCTAAACT GTGCCGCTTCTTTTGATTCTGACAAATCTGTGCTGTTACAGTTCAAGAACTCAGTCTCTGACCCTTCAGGGCTTCTCTCTGGCTGGAATCTGATCAACAC CAACCATTGTCACTGGAACGGCGTCTCGTGTGATGCTAATTCGCGTGTTGTTTCGCTTAATATCACTGGAAATGGCAACTATAGAGGTAAGGACAGTGGA AATGGAAGTGCTTTTTTGTGTTCTGGTGATTCTATTGAGCTTTCACTGTATGGGTTTGGGATTAGGAGAGATTGTAAGGGTAGTAAGGGGGTTTTAGTGG GAAAGTTGTTGCCTTTTATTGCCAAGTTAAGTGAACTTAGGGTTTTATCATTGCCCTTTAATGGCTTTCAGGGTTTGATACCTAGTGAAATATGGTGCAT GGAGAAGCTAGAGGTTCTTGATCTTGAGGGTAATTTGGTGTCTGGGTCGTTGCCGGTTTCATTTTCCGGGTTAAGGAACTTGAGGGTTTTGAATTTTGGG TTTAACAGGATAGAAGGAGAGATACCGGGTTCACTTTCTTACTGTGAAGGTTTGGAGATCTTGAATTTAGCTGGAAATCGTATCAATGGGACAATTCCGG GGTTTGTTGGCAGGTTAAAGGGTGTGTATCTGTCATTGAATCAGCTTGGTGGTTCTCTGCCTGAGGAGTTTGGTGATAATTGTGAGAAACTTGAGCATTT GGATTTGTCTGGGAATTTTGTGGTTGGAGGGATTCCTAGTACTTTAGGGAAATGTGGGAATCTGAGGACACTATTGTTGTATTCAAATCTGTTTGAAGAA ATTATTCCACATGAACTCGGTAAGCTTGGGAAGCTAGAAGTGTTGGATGTGTCAAGGAATAGTCTTAGTGGGCCAGTGCCACCTGAGCTTGGAAATTGCT CTGCATTATCTGTGCTTGTGCTTTCAAATATGTTTGATCCATATCAGGATTTTAATGGTACGAGAGGGGACAGTTCGTTGGATCATTCAATTTCTGTGAA TGAAGATTTCAACTTTTTTCAAGGGGATATGCCTGCAGATGTTCTGACTCTTCCAAAACTGAGGATGCTGTGGGCACCAAGTGCAATGCTTGAGGGCATG TTGATGAGCAACTGGGATCCCTGTGATAGCTTGGAAATGATCAATTTGTCTCATAACTTCCTCACAGGAGAAATCCCTCATGGGATTAATCACTGCAATA AGCTGTGGTATCTGGATTTGAGCTTCAATAAGCTTAATGGGGAACTTCTTGCGGAGTTTCCAGTTCCTTGCATGACTGTTTTTGATGTTAGTGAAAATGC ATTGTCAGGTTCCATCCCCAGTTTTTATAGCAGCAGTTGCCCTCGTGTTCCTTCCGTGAATGATAATCCCTTGAATGCTTATGATCCATCATCTGCCTAT GTATCATTTTTTGCATATAAAGCTCAGACTGGAAGTCCTGCTATGTCACTTGGAGGAAGTGGTGGAATCACAGTTTTTCATAACTTTGGGAGCAATAACT TTACTGGTACTCTCCAGTCTATTCCTATTGCACCTGTAAGATCAGGAAAGCAAACTGCTTACACATTTTTGGCTGGAGATAACAAGCTCAGCGGGCCATT CCCAGGTATTCTGTTTGAGAAGTGTCACGGATTGAACACGATGATTGTTAATGTTAGTAGCAATAGAATGTCTGGTCAGATTCCGGCAAATATGGGTCCA ATGTGCAGATCTCTCAAGCTTCTGGATGCATCTAAGAATCAGATTATGGGGACCATTCCCCCAAGCGTTGGTGATTTGGTTTCACTCGTTTCTCTTGACA TGAGTTGGAACCTTTTGCATGGCCCGATACCATCTAGTTTGAGCCAAATAAGGGGTTTGAAGTACCTGTCTTTGGCTGGTAATGGAATAAATGGTTCCAT TCCTTCTAGCTTAGGGAAGCTGCAAACTTTAGAGGTTCTGGATCTCTCTTCGAACTTGCTTTCAGGAGAGATACCAAATGATCTTGTGAAGTTGAGAAAC CTGACTGCTCTTCTTCTCAATAACAATAAACTCTCTGGGCAGATACCCTCTGGTTTAGCAAGTATGACTTTGCTCTCAATGTTTAATGTCTCCTTCAATA ACTTGTCTGGGCCACTGCCATCAAGTAACAGTTTGATGCAATGTAGCAGTGTTCTTGGAAACCCATATCTACACCCTTGCCGTGTTTTCTCCCTAGCAGT GCCATCTCCGGATTCTCAAGGAAGGGCTTCTGAGGCACAAGGCTATGCTTCTCTCTCAGGTCAAACCCAGAAGAGGCAGGGTGGTGGCTTCACTTCAATT GAGATAGCATCAATAGCCTCTGCATCAGCCATTTTTTCAGTTCTCCTAGCTCTGATTTTCCTATTCATCTACACCAGAAAGTGGAGTCCAAAGTCCAAAA TAATGGGATCTGCCAGAAAGGAAGTAACAATCTTCACAGACATTGGGGTTACCCTGACATTTGAGAATGTGGTGCGGGCCACTGGGAGTTTCAATGCGAG CAATTGCATTGGCAATGGAGGTTTTGGGGCCACTTACAAGGCAGAGATCTCTCCAGGAGTTCTGGTGGCAATTAAAAGGCTTGCAGTTGGACGGTTCCAG GGCATTCAACAGTTTCATGCAGAGATCAAAACCCTTGGAAGGCTCCACCATCCAAATCTTGTCACTTTGATTGGTTATCATGCAAGTGAAACAGAAATGT TTCTCATATATAATTATTTGCCTGGTGGTAATTTGGAAAAGTTTATTCAGGAGAGGTCCACAAGGGCAGTGGATTGGAGGATACTTCACAAAATTGCTCT GGACATAGCTCGTGCACTTGCCTACCTGCATGATCAGTGTGTACCACGTGTACTCCATCGGGATGTTAAGCCCAGCAACATTCTTTTAGATGATGATTTT AATGCCTATTTATCCGACTTTGGTTTGGCCAGGCTCTTGGGAACTTCGGAAACCCATGCTACTACTGGAGTGGCTGGAACTTTTGGGTATGTTGCCCCAG AGTATGCAATGACTTGCCGTGTATCAGATAAGGCTGATGTTTATAGTTACGGGGTTGTGCTTCTTGAGTTACTTTCAGACAAGAAAGCTCTGGATCCTTC ATTTTCCCCGTATGGAAATGGTTTTAACATTGTTGCTTGGGCATGCATGCTCCTTCGGCAGGGCAGAGCTAAGGAGTTCTTCACGGGAGGATTATGGGAT GCTGGGCCACATGATGATTTGGTAGAAATCTTACACCTGGCAGTTGTGTGTACGGTGGACACACTATCGACCAGGCCTACGATGAAGCAGGTTGTACGAC GGTTGAAACAACTGCAACCGCCATCATGCTAG
AA sequence Show only first row Show all	>Potri.004G120500.1 pacid=42795751 polypeptide=Potri.004G120500.1.p locus=Potri.004G120500 ID=Potri.004G120500.1.v4.1 annot-version=v4.1 MGSSCFPSSVIKWQAFTKLKLFSLFCAFSLSLNCAASFDSDKSVLLQFKNSVSDPSGLLSGWNLINTNHCHWNGVSCDANSRVVSLNITGNGNYRGKDSG NGSAFLCSGDSIELSLYGFGIRRDCKGSKGVLVGKLLPFIAKLSELRVLSLPFNGFQGLIPSEIWCMEKLEVLDLEGNLVSGSLPVSFSGLRNLRVLNFG FNRIEGEIPGSLSYCEGLEILNLAGNRINGTIPGFVGRLKGVYLSLNQLGGSLPEEFGDNCEKLEHLDLSGNFVVGGIPSTLGKCGNLRTLLLYSNLFEE IIPHELGKLGKLEVLDVSRNSLSGPVPPELGNCSALSVLVLSNMFDPYQDFNGTRGDSSLDHSISVNEDFNFFQGDMPADVLTLPKLRMLWAPSAMLEGM LMSNWDPCDSLEMINLSHNFLTGEIPHGINHCNKLWYLDLSFNKLNGELLAEFPVPCMTVFDVSENALSGSIPSFYSSSCPRVPSVNDNPLNAYDPSSAY VSFFAYKAQTGSPAMSLGGSGGITVFHNFGSNNFTGTLQSIPIAPVRSGKQTAYTFLAGDNKLSGPFPGILFEKCHGLNTMIVNVSSNRMSGQIPANMGP MCRSLKLLDASKNQIMGTIPPSVGDLVSLVSLDMSWNLLHGPIPSSLSQIRGLKYLSLAGNGINGSIPSSLGKLQTLEVLDLSSNLLSGEIPNDLVKLRN LTALLLNNNKLSGQIPSGLASMTLLSMFNVSFNNLSGPLPSSNSLMQCSSVLGNPYLHPCRVFSLAVPSPDSQGRASEAQGYASLSGQTQKRQGGGFTSI EIASIASASAIFSVLLALIFLFIYTRKWSPKSKIMGSARKEVTIFTDIGVTLTFENVVRATGSFNASNCIGNGGFGATYKAEISPGVLVAIKRLAVGRFQ GIQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDF NAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSPYGNGFNIVAWACMLLRQGRAKEFFTGGLWD AGPHDDLVEILHLAVVCTVDTLSTRPTMKQVVRRLKQLQPPSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.017G094400 [exp]	1.00	0.8948
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	4.89	0.8391
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	5.74	0.8414
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	8.12	0.8262
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	9.48	0.8379
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	13.85	0.8101
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	16.24	0.7737	Pt-CNGC.2
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	16.73	0.8191	APK1.1
AT1G64140			unknown protein		Potri.001G097200 [exp]	17.02	0.7978
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	17.49	0.7797

Compare expression of checked genes

Potri.004G120500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.