Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29185 518 / 0 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032999 [exp] 525 / 0 AT3G29185 478 / 7e-168 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10015378 [exp] 521 / 0 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [poplar] [flax] Calycin PF12204 [poplar] [flax] DUF3598 Domain of unknown function (DUF3598)
Representative CDS sequence Show only first row Show all	>Potri.004G120900.1 pacid=42796190 polypeptide=Potri.004G120900.1.p locus=Potri.004G120900 ID=Potri.004G120900.1.v4.1 annot-version=v4.1 ATGGCTTCTATTTGCAATTCCCTATCCCTCGCTCCCAAATTATCTTTCAAACCAAGCCCACTCTTTTCTGCTTCCATCTCCACTTCTTGGAGCCCCAAAA CCCGACCTACCACCCCTCTCTCTTCCTCCTCCTCCTCAACAAGAAGTGTTAAAGATGACCCTAAATCCCCAGAACCCATCAGCATTGACAATCTACACCG TTTTTTTGACCTTAGCATAGGCAAATGGCACGGTTCTTTCCATCAATTTGATGCAAAAGGAAAATTGATGCAAAAAGTGAGCACAAAGCTTGCAGCAAGC TCTTACGGTGAAGATGAACTCATTAGTCTCATTCAAACGCTATACATAAAACAATCTCCATCAAGCACCTCAATCTCCAGACATGATGAGGAGCCAGAAT GGGCAGAATACAAAATCAAAGAAACCAATATGTTCACTGCAGATAAATATCAACAGATTGCCTTTTTCCCCAATGAGAGGGCTTTTTCTCTAAGGTACCA GACAGCTGGCATGTTAGAAACTGTGTTAAGGCAAGGGGTGCTGGGTGAAGATGATACTGGAGAAGAATCACCAAAAAACCTCAAGCTTCCTTCTCGTCGG CCATCTATTGTTTGTGAGAATTGCCTATATTCACAAGAGAAGGACAGACGAGCAAGAGCCTTTCATATCATGGACCCTAAAGGCATTTTGGAAATGCTTC TTATCTTCCTTGAGGATAGAGGTGATGGGGTGCCTTTTCATCCTTCACTTGAAAGTAACAGTGATAGCCCAAACAGGATCTTACCATTACTTGGAAAGTG GAAAGGTCATTCTCAAACAAAACGCAGTGGTGTTTACGGAGCAACAATTGCTGAAGCCGATACAATTGCTTTGCTTGAAATGGATGGCAAGGGTCAGCTT ATTCAGGATATTTCTTCCACATCGGATGGAGGTGATGTTACAACTAATGTGCATTGGACTGGTACCAGATCAGATGACTTGATCACATTTGATGGAGGAT ACCAAATTACATTATTGCCTGGAGGCATGTACATGGGGTGCCCTTCTGATATTTCTAAGAACGTGGCAGAGTCTAAGTCGTTTCATCTGGAGTTCTGCTG GCTTGAATCACCTGAGAAGAGACAAAGACTGGTTAGAACCTACGATGTAGACGGCTTGGCTGTCTCATCAACTTATTTTTCTGAAACAAAAATGTGA
AA sequence Show only first row Show all	>Potri.004G120900.1 pacid=42796190 polypeptide=Potri.004G120900.1.p locus=Potri.004G120900 ID=Potri.004G120900.1.v4.1 annot-version=v4.1 MASICNSLSLAPKLSFKPSPLFSASISTSWSPKTRPTTPLSSSSSSTRSVKDDPKSPEPISIDNLHRFFDLSIGKWHGSFHQFDAKGKLMQKVSTKLAAS SYGEDELISLIQTLYIKQSPSSTSISRHDEEPEWAEYKIKETNMFTADKYQQIAFFPNERAFSLRYQTAGMLETVLRQGVLGEDDTGEESPKNLKLPSRR PSIVCENCLYSQEKDRRARAFHIMDPKGILEMLLIFLEDRGDGVPFHPSLESNSDSPNRILPLLGKWKGHSQTKRSGVYGATIAEADTIALLEMDGKGQL IQDISSTSDGGDVTTNVHWTGTRSDDLITFDGGYQITLLPGGMYMGCPSDISKNVAESKSFHLEFCWLESPEKRQRLVRTYDVDGLAVSSTYFSETKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	0	1
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	2.44	0.9872
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	2.64	0.9827
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	2.82	0.9863
AT5G63520			unknown protein		Potri.011G010200 [exp]	3.60	0.9779
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	3.87	0.9859
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	4.89	0.9798
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	5.29	0.9714
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	6.70	0.9797
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	6.78	0.9734	IM30.2
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	6.92	0.9839

Compare expression of checked genes

Potri.004G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.