Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15400 1509 / 0 U-box domain-containing protein (.1) AT3G52450 44 / 0.0005 PUB22 plant U-box 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089600 [exp] 1877 / 0 AT5G15400 1557 / 0.0 U-box domain-containing protein (.1) Potri.002G248600 [exp] 49 / 2e-05 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.016G069400 [exp] 45 / 0.0002 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.008G128600 [exp] 45 / 0.0003 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 44 / 0.0005 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G248700 [exp] 44 / 0.0005 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.006G202600 [exp] 44 / 0.0006 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.010G185900 [exp] 44 / 0.0007 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030697 [exp] 1379 / 0 AT5G15400 1391 / 0.0 U-box domain-containing protein (.1) Lus10005222 [exp] 1321 / 0 AT5G15400 1340 / 0.0 U-box domain-containing protein (.1) Lus10043471 [exp] 46 / 0.0002 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 46 / 0.0003 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10025884 [exp] 44 / 0.0004 AT3G07370 375 / 5e-132 carboxyl terminus of HSC70-interacting protein (.1) Lus10038219 [exp] 44 / 0.0004 AT3G07370 372 / 6e-131 carboxyl terminus of HSC70-interacting protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0229 [poplar] [flax] PF10408 [poplar] [flax] Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence Show only first row Show all	>Potri.004G121200.1 pacid=42794708 polypeptide=Potri.004G121200.1.p locus=Potri.004G121200 ID=Potri.004G121200.1.v4.1 annot-version=v4.1 ATGGCAACGACCTCAAATAAACCTCAGAGATCTCTCCAAGAAATCGAGGACATTGTCCTCCGCAGAATCCTCTCAGTCTCCCTCGCCGACTCCTCTGATC CTCGAATTTTCTACTTAGAAATGACAGCAGCTGAGATTCTCAGTGAAGGCAAAGACTTGAAACTCACTCGCGACTTAATTGAACGTGTCTTGATCGATCG ATTGTCTGTTCAAAGCCCTAACGCGGAACCTCCTTTCAATTACCTCTTAGGCTGCTACCGTCGTGCTGTTGATGAGTTGAAGAAAATCGCCAATATGAAG GACAAAAATGTGAAATCAGAGCTGGAATTGTCGATCAAGCAAGTCAAGAAGTTGTCGGTTTCGTATTGCAGGATTCATTTAGGGAATCCTGACTTGTTTG GGGGTGATTCGAGTGTTGTTAGAAAGAGCGGGAATTCCAATGTTTCTCCGGTTCTGCCCTTGATTTTTGCGATGGTTGATGGGTTTAATAGTGGCGGAAT TCAGCCACCGCCGCCGGGGTTTATAGAGGAGTTTTTTAGAGAAGGGGATTTTGATAGCTTGGATCCGATTTTGAAGGGTTTATATGAGGATTTGAGGGGA AATGTTTTGAAGGTTTCTGTTTTAGGGAATTTTCAACAACCATTAAGGGCTTTATTGTTTTTGGTTAGTTTTAATGTCGGTGCTAAATCACTTGTTAGTC ATAAGTGGTGGATTCCGACAGGGGCATATGTAAATGGGAGAGTTATTGAAATGACAAGTATTTTGGGTCCTTTTTTTCATATTAGTGCATGGCCTGATAA TACTATTTTTAAGAGCGAGCCGGATGTGGGGCAGCAGTGTTTCTCTGATGCAACAAATCGTCGACCTGCTGATTTGTTATCTTCATTTACTACAATTAAG ACTCTTGTGAATAATTTATATGATGGATTAGCAGAAGTGCTTCTTGCTCTTCTTAAAAATGGTGATACTCGTGAGAGTGTGCTTCAGTATCTTGCTGAGG TGATCAATAGAAATGCGACAAGAGCTCACATACAGGTCGATCCTTTATCTTGTGCAAGTTCGGGCATGTTTATCAATCTAAGTGCTGTCATGCTTAAGCT ATCCGAACCTTTTTTAGATGCAAATTTGTCAAAAAGGAACAAAATTGATCCAAATTACGTGTTTCACAATAACCGTTTGGATCTAAGAGGGTTGACAGCT CTGCTTGCATCATCAGGAGAAATCACTCAATGGCTTAATACTCCGGGAAAAACTGATATCTCTGCACAATCTAATGATGTTGAAAATCGCTTGGTACAAT CTCAAGAAGCCACCAGTTCTGGTAGAAGTGGTGAAAAGTCTAAATACTCATTTATTTGTGAGTGCTTCTTTATGACTGCAAGGGTGCTCAACTTGGGTCT GTTAAAAGCATTTTCCGACTTTAAGCATCTAGTTCAGGAAATTTCTAGATGCGAAGATATGCTCTCCACTTTTAAAGCCTTGCAGGAGCAGACGCCGTCT CAGCAGCTGCAGCAGGATATTGACCGTCTTGAGAAAGATATAGAGTTATATTCACAGGAAAAGCTTTGTTATGAAGCTCAAATATTAAGGGATGGAGCAC TTATTCAGCGTGCACTTTCTTTCTACCGGTTAATGTTGGTTTGGTTGGTTAGCCTGGTCGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAAAGGA ATTTGCCTCAATGCCGGAGCATTTTGTGGAAGATGCCATGGAACTAATTATATTTGCCTCTCGGATTCCAAAAGCTTTGGATGGAGTCTTACTGGATGAT TTTATGAACTTCATTATCATGTTCATGGCAAGTCCTACATATATTAGAAACCCTTATTTAAGAGCAAAGATGGTTGAAGTATTGAACTGCTGGATGCCAC GGAGAAGTGGTTCATCTGCTACAGCTTCTCTATTTGAAGGGCACCAACTGTCACTTGAGTATCTTGTAAGGAACCTCTTGAAGCTTTATGTTGACATTGA GCTCACAGGCTCTCACACACAGTTCTATGACAAGTTCAACATACGGCATAATATTGCCGAACTTCTTGAATATCTATGGCAGGTCCCTAGTCATCGTGAT ATTTGGAGAAAGATTGCCAAGGAAGAGGAAAAGGGTGTCTATCTGAATTTCTTGAACTTCCTGATCAACGATAGCATCTATCTTCTTGATGAAAGTCTGA GCAAAATTCTTGAACTCAAAGGGTTAGAAGCTGAGATGTCCAACACCACAGAATGGGAGCGAAGACCAGCTCAAGAGAGGCAGGAGAGAACCCGCCTTTT CCAGTCCCAAGAGAATATCATCCGCATTGACATGAAGTTGGCAAATGAAGATTTGAGCATGCTGACATTTACATCAAAACAGATTACAGCACCTTTCCTT CTCCCTGAGATGGTTGACAGAGTGGCCAGCATGCTCAATTACTTCTTGTTACAACTTGTGGGTCCCCAAAGGAAATCCCTTACCCTGAAAGACCCTGAAA AGTATGAATTTCGCCCAAAACAGTTGCTTGAGCAGATTGTCTGTATATATGTTCATTTGGCGAGGGGTGATAATGAAAACATATTCCCAGCTGCCATCTC GAAGGATGGGCGGTCATACAATGAGCAGTTATTTACTGCTGCTGTTGATGTCCTTCGGAGAATTGGTGAAGATGGGAGGGTCATCCAGGAATTTATTGAG CTTGGTACAAAAGCCAGGGTTGCAGCTTCTGAGGCAATGGATGCTGAAGCTGCCCTTGGAGAGATACCAGATGAATTCCTTGATCCAATTCAGTGCACTT TGATGAAGGATCCGGTGATCTTACCTTCTTCAAGAATCACAGTTGATAGGCCTGTCATTCAAAGGCATCTTCTGAGTGACAATACTGACCCCTTCAACCG ATCCCATCTTACTGTGGACATGTTGATTCCAAACACTGAGTTGAAGGCAAGAATAAAGGAGTTCGTCAGGTCCCAAGAATTAAAGAAGCACGGGGAAGAC TTCAGCTTGCAGAGGGCCAAAGATACAATCCAAACCACAACTGAAGAAATGTTGATTGATTAG
AA sequence Show only first row Show all	>Potri.004G121200.1 pacid=42794708 polypeptide=Potri.004G121200.1.p locus=Potri.004G121200 ID=Potri.004G121200.1.v4.1 annot-version=v4.1 MATTSNKPQRSLQEIEDIVLRRILSVSLADSSDPRIFYLEMTAAEILSEGKDLKLTRDLIERVLIDRLSVQSPNAEPPFNYLLGCYRRAVDELKKIANMK DKNVKSELELSIKQVKKLSVSYCRIHLGNPDLFGGDSSVVRKSGNSNVSPVLPLIFAMVDGFNSGGIQPPPPGFIEEFFREGDFDSLDPILKGLYEDLRG NVLKVSVLGNFQQPLRALLFLVSFNVGAKSLVSHKWWIPTGAYVNGRVIEMTSILGPFFHISAWPDNTIFKSEPDVGQQCFSDATNRRPADLLSSFTTIK TLVNNLYDGLAEVLLALLKNGDTRESVLQYLAEVINRNATRAHIQVDPLSCASSGMFINLSAVMLKLSEPFLDANLSKRNKIDPNYVFHNNRLDLRGLTA LLASSGEITQWLNTPGKTDISAQSNDVENRLVQSQEATSSGRSGEKSKYSFICECFFMTARVLNLGLLKAFSDFKHLVQEISRCEDMLSTFKALQEQTPS QQLQQDIDRLEKDIELYSQEKLCYEAQILRDGALIQRALSFYRLMLVWLVSLVGGFKMPLPSTCPKEFASMPEHFVEDAMELIIFASRIPKALDGVLLDD FMNFIIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATASLFEGHQLSLEYLVRNLLKLYVDIELTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRD IWRKIAKEEEKGVYLNFLNFLINDSIYLLDESLSKILELKGLEAEMSNTTEWERRPAQERQERTRLFQSQENIIRIDMKLANEDLSMLTFTSKQITAPFL LPEMVDRVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLEQIVCIYVHLARGDNENIFPAAISKDGRSYNEQLFTAAVDVLRRIGEDGRVIQEFIE LGTKARVAASEAMDAEAALGEIPDEFLDPIQCTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTVDMLIPNTELKARIKEFVRSQELKKHGED FSLQRAKDTIQTTTEEMLID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15400			U-box domain-containing protei...		Potri.004G121200 [exp]	0	1
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	6.00	0.7885
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	8.12	0.7648
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	12.48	0.7404
AT1G73875			DNAse I-like superfamily prote...		Potri.012G057100 [exp]	14.42	0.7471
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	22.69	0.7432
AT5G47400			unknown protein		Potri.001G155800 [exp]	24.55	0.7233
					Potri.015G138050 [exp]	35.07	0.7227
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	37.69	0.6593	CEF.1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G046300 [exp]	38.10	0.7198
					Potri.016G000700 [exp]	39.82	0.6907

Compare expression of checked genes

Potri.004G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.