Plant FIBer expression Database

Potri.004G121400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14520 799 / 0 pescadillo-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000618
[exp]
870 / 0 AT5G14520 787 / 0.0 pescadillo-related (.1)
Lus10002201
[exp]
424 / 2e-145 AT5G14520 351 / 2e-117 pescadillo-related (.1)
Lus10001361
[exp]
350 / 3e-117 AT5G14520 312 / 3e-103 pescadillo-related (.1)
Lus10000357
[exp]
176 / 4e-52 AT5G14520 180 / 2e-54 pescadillo-related (.1)
Lus10001362
[exp]
162 / 1e-46 AT5G14520 164 / 3e-48 pescadillo-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06732 Pescadillo_N Pescadillo N-terminus
CL0459 BRCT-like PF16589 BRCT_2 BRCT domain, a BRCA1 C-terminus domain
Representative CDS sequence
>Potri.004G121400.2 pacid=42795816 polypeptide=Potri.004G121400.2.p locus=Potri.004G121400 ID=Potri.004G121400.2.v4.1 annot-version=v4.1
ATGGTTGCAAGGAAAAAGCATTACAGACCTCCGGGTAAGAAGAAGGAAGGCAACGCTGCCAGATACGTTACCAGGTCTCAAGCTATTAAGCAGCTCCAAG
TCACGCTAGGTTTTTTCCGGAGGTTAAGCATTCTAAAAGGTATATTCCCTCGAGAGCCAAAGAAGAAGTTCAAGGGAAATAATCATACTTATTATCATGT
CAAGGATGTTGCTTTCCTTCAACATGAACCGTTACTCGACAAGTTTAGAGACATAAGGGCTTACCAGAAGAAGATAAAGAAAGCTGAGGCCAAGAAGAAC
GCTGATCTTGCCACGCTTCTTCGAACTCGGGAACCCACTTACAAGCTAGACAGGCTTGTTAGAGAAAGGTTTCCTAAGTTTGTTGATGCGCTGAGAGACT
TGGATGATTGTTTAACCATGGTGCATCTTTTTGCAGCATTACCTGCTGTAGAGAGGGCAAAAATTGATGTGGAACTCATACATAATTGTAGGAGATTGAG
TCATGAATGGCAAGCTTATGTTTCCCGTACTTATAAATTGAGGAAGGTTTTCATTTCCGTAAAGGGCATATATTATCAGGCTGAGATTGAGGGTCAAAAG
ATCACTTGGTTAACTCCTCATGCAATGCAACAAGTTTTGCCAGATGATGTCAACTTCAGTGTTATGTTAACCTTTTTGGAGTTTTATGAGACTCTCCTTG
GATTTGTCAATTTTAGGCTCTATCATTCCATAAATGTGAAGTATCCACCCATTCTTGATCCCCAGCTGGAAGCTTTAGCATCAGATCTCTATGCGCTGTC
AAGATACATTGTTTCTAACTCCAGAACCTCCACCTTGGAACCCACAGCTGCTAGTTCATCTACATCACAGCAATTAGAGGCTCAGGAGAAGGAGATGCAG
GCTGATGAGTCTGAACTAAGGCTTGCTCAACTTCAGCATCAACTTCCTTCCAACGAACCCGGTGCATTGATGCACCTGATGGAAAATACTGAGTGTGAAA
ATGAAGATGATCAAGATACAAAGGAGTGCAGGAGGCTCTTTAAGAATATGAAATTCTTCTTGGGTCGCGAGGTTCCTAGAGAATCATTGCTCTTTGTAAT
TCCTGCTTTTGGTGGGGTTGTTTCTTGGGACGGGGAAGCTGCTCCATATAAGGAATCTGACCAGAGCATTACTCATCAGATTGTTGATAGGCCAACCCAA
GGTCATAAATACCTTTCGAGAGAATATGTTCAGCCACAGTGGATTTACGATTGCATTAATGCACGGATCATATTGCCAACTGAAGCTTATATGGTGGGAA
GGATTCCTCCCCCGCACCTGTCGCCTTTTGTTGATAATGATGCAGAAGGCTATATTCCTGATTATGCAGAGACTATCAAACGCTTGCAGGCTGCTGCCAA
AAATGAAGTCCTTCCCATGCCTGGAGTAGGAAAGGAAGATTTAGATGATCCTCAAAATTTGTTGGTTGAAGGTTATATTAGTCGAGCAGAGGCTAATGAG
GCTGTGAAGACAAAGAAAAAGATGGCGACTCTTGAGAAGCAGTACCATGAAGAGCTACAAAGGGAACTTCAGGGTGCAGTCATGAAGAAAAGCAAGCAGG
GCTCTGAAGAGGATGCAAAGGCTAGTGAAGAGTCTGTCCCTGATCCGAAACAGATTGCTGAGGACATTGACACAATGTCAAAATTAGGGATGTCACGTAA
AAAGAGGGGCCTTCTGGAAGCTATTGAGAAAAGGAAGGAACGGGACACTGCTCGCATTAGCAAGCTGAAGGAGCGGAAGAAGAAGCTGAAAAGCTCAGAA
AACTGA
AA sequence
>Potri.004G121400.2 pacid=42795816 polypeptide=Potri.004G121400.2.p locus=Potri.004G121400 ID=Potri.004G121400.2.v4.1 annot-version=v4.1
MVARKKHYRPPGKKKEGNAARYVTRSQAIKQLQVTLGFFRRLSILKGIFPREPKKKFKGNNHTYYHVKDVAFLQHEPLLDKFRDIRAYQKKIKKAEAKKN
ADLATLLRTREPTYKLDRLVRERFPKFVDALRDLDDCLTMVHLFAALPAVERAKIDVELIHNCRRLSHEWQAYVSRTYKLRKVFISVKGIYYQAEIEGQK
ITWLTPHAMQQVLPDDVNFSVMLTFLEFYETLLGFVNFRLYHSINVKYPPILDPQLEALASDLYALSRYIVSNSRTSTLEPTAASSSTSQQLEAQEKEMQ
ADESELRLAQLQHQLPSNEPGALMHLMENTECENEDDQDTKECRRLFKNMKFFLGREVPRESLLFVIPAFGGVVSWDGEAAPYKESDQSITHQIVDRPTQ
GHKYLSREYVQPQWIYDCINARIILPTEAYMVGRIPPPHLSPFVDNDAEGYIPDYAETIKRLQAAAKNEVLPMPGVGKEDLDDPQNLLVEGYISRAEANE
AVKTKKKMATLEKQYHEELQRELQGAVMKKSKQGSEEDAKASEESVPDPKQIAEDIDTMSKLGMSRKKRGLLEAIEKRKERDTARISKLKERKKKLKSSE
N

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G14520 pescadillo-related (.1) Potri.004G121400
[exp]
0 1
AT5G67630 P-loop containing nucleoside t... Potri.016G096800
[exp]
1.00 0.9083
AT4G34910 P-loop containing nucleoside t... Potri.007G021800
[exp]
2.44 0.8978
AT3G16810 APUM24 pumilio 24 (.1) Potri.010G005600
[exp]
2.82 0.8932
AT3G07870 F-box and associated interacti... Potri.011G137200
[exp]
3.87 0.8427
AT3G02650 Tetratricopeptide repeat (TPR)... Potri.001G361500
[exp]
4.47 0.8564
AT4G07410 PCN POPCORN, Transducin family pro... Potri.014G014900
[exp]
4.89 0.8687
AT5G22100 RNA cyclase family protein (.1... Potri.009G016000
[exp]
5.29 0.8693
AT5G15550 Transducin/WD40 repeat-like su... Potri.017G093300
[exp]
5.47 0.8735
AT2G19540 Transducin family protein / WD... Potri.007G094000
[exp]
5.65 0.8349
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.017G099200
[exp]
6.00 0.8015

Potri.004G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.