Plant FIBer expression Database

Potri.004G121500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03820 709 / 0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G085700
[exp]
1050 / 0 AT2G03820 694 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Potri.017G137500
[exp]
696 / 0 AT2G03820 464 / 2e-161 nonsense-mediated mRNA decay NMD3 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025109
[exp]
819 / 0 AT2G03820 763 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Lus10023975
[exp]
815 / 0 AT2G03820 767 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04981 NMD3 NMD3 family
Representative CDS sequence
>Potri.004G121500.1 pacid=42795676 polypeptide=Potri.004G121500.1.p locus=Potri.004G121500 ID=Potri.004G121500.1.v4.1 annot-version=v4.1
ATGTGTGTTTGCTTTGTGTTGTCCGTGTTCTTATTCTTTGTGTTATACTTGCCAGATATGGCCGAAGAAGCAGGCATGTTTATGGTTCATCAAACAATTG
GAAGTGTTTTGTGTTGCAAATGTGGTATTCCTATGCAACCAAATGCTGCTAATATGTGTGTTAAGTGTTTGCGCTCTGAAGTTGACATCACTGAAGGTCT
AAAGAAGAATGTAATTCTTTTACATTGCCCGGAGTGTGATACCTACTTGGATCCACCTAGTACGCGGATTAGGGCCCAACTGGAATCGAGGGAGTTGATG
GCATTTTGTCTGAAGAAGTTGAAATTGAAGTCCACAGGAGTTATTTTGGTAAATGCGGAATTTATTTGGACTGAACCACATTCCAAGAGGATCAAGCTCC
GAGTGAGAGTTCAGAAGGAGGTCCTTCATGGTGCAATACTCGAACAAGCATATGTTATTGAGTATGTTCAGCAGGACCAAATGTGTGATTCTTGCACAAG
AGTTCAGGCCAACCCTGATCAGTGGGTTGCTGGTGTCCAGCTCCGGCAACATGTTGCTCATAGAAGAACTTTCTTTTACTTGGAGCAGCTGATTTTGAAG
CATGATGCTGCTGCCCGTGCCATTAAAATAAAGCAAATGGATCATGGTATTGATTTTTTCTTTGCAAATCGTAGCCATGGTGTTAAATTTGTTGACTTTG
TGGGTAAAGTAGCTCCAGTAAAGAGTCGCACTGACAAGCAACTTGTTTCCCATGATACTAAGAGCAACAACTATAATTACAAACATACTTTCTCTGTTGA
AATCTCTCCAATTTGCCGTGAGGATTTAGTCTGCTTGCCTCCAAGGGTTGCTGTTAGCTTGGGGAATCTAGGTCCTCTTGTGATCTGCTCGAAAGTGACA
AATAGCATTGCTTTGTTAGATCCTTTCACCCTGAGACACTGCTTCTTGGATGCTGACCAGTACTGGAGAACACCCTTTAAGTCTCTTCTCACTAGCAGGC
AACTTGTAGAGTATATTGTATTTGATGTGGACTTTGTTTCCCCTGAAGTTAATATTGGTGGGTCTAGATATGCTCTCGCTGATGCCACTGTTGCTCGCAT
GTCAGATTTTGGGAAGAATGATACCATGTTCAACATAAAAACGCACCTGGGGCATATTTTGAAACCTGGTGATTATGCTCTTGGTTATGATTTACATGGA
GCTAACAGTAATGACATGGAGCTTGACAAGTACAAAAATCTAGTCATTCCAGAAGCAATTTTGGTAAAGAAAAGCTATGAAGAGAAGCGCCAGAGGAAAC
GAGGGAAGCCTCGTTCCTGGAAGCTAAAGTCCCTCAATATGGAGGTTGATGACACGAGAGCTAGAGGTGACCAAGAGAAGATGAACTCAGAGTATGAACA
GTTCCTGAGAGATCTGGAAGAGAACCCGGAGTTGAGGTTCAATGTATCATTGTATCGTAACAAAGAATATCAGCCTTCTGAGATGGCATCTATGACTGAT
GGGGAAGATATACCTTCCATTCCTCTAGAGGAGTTGCTTGCTGATCTTGAGATAAATGACGCCGAAGATGAGGACGAAGGCATGGGGGAATGA
AA sequence
>Potri.004G121500.1 pacid=42795676 polypeptide=Potri.004G121500.1.p locus=Potri.004G121500 ID=Potri.004G121500.1.v4.1 annot-version=v4.1
MCVCFVLSVFLFFVLYLPDMAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPECDTYLDPPSTRIRAQLESRELM
AFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQKEVLHGAILEQAYVIEYVQQDQMCDSCTRVQANPDQWVAGVQLRQHVAHRRTFFYLEQLILK
HDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRTDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVT
NSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHG
ANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMASMTD
GEDIPSIPLEELLADLEINDAEDEDEGMGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G121500
[exp]
0 1
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G085700
[exp]
1.00 0.9276
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
7.74 0.7444
AT5G58470 TAF15b TBP-associated factor 15B (.1.... Potri.001G281300
[exp]
11.95 0.6702
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Potri.016G093500
[exp]
13.41 0.6585
AT1G11780 oxidoreductase, 2OG-Fe(II) oxy... Potri.003G171900
[exp]
14.59 0.7191
AT1G76940 RNA-binding (RRM/RBD/RNP motif... Potri.002G070200
[exp]
16.61 0.6702 RBP1.2
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
18.43 0.6981
AT5G07900 Mitochondrial transcription te... Potri.001G034966
[exp]
18.97 0.6710
AT4G18905 Transducin/WD40 repeat-like su... Potri.007G019601
[exp]
24.00 0.6560
AT2G02470 Alfin AL6 alfin-like 6 (.1.2) Potri.004G230500
[exp]
25.78 0.6285

Potri.004G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.