Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01170 234 / 4e-78 Ribosomal protein L34e superfamily protein (.1) AT5G15260 207 / 2e-67 Ribosomal protein L34e superfamily protein (.1) AT3G06180 95 / 2e-23 Ribosomal protein L34e superfamily protein (.1) AT5G19025 95 / 2e-23 Ribosomal protein L34e superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084500 [exp] 363 / 1e-128 AT3G01170 237 / 4e-79 Ribosomal protein L34e superfamily protein (.1) Potri.008G201700 [exp] 97 / 3e-24 AT3G06180 208 / 1e-67 Ribosomal protein L34e superfamily protein (.1) Potri.010G030000 [exp] 93 / 7e-23 AT3G06180 219 / 6e-72 Ribosomal protein L34e superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005234 [exp] 178 / 2e-56 AT3G01170 179 / 6e-57 Ribosomal protein L34e superfamily protein (.1) Lus10030686 [exp] 171 / 3e-53 AT3G01170 169 / 6e-53 Ribosomal protein L34e superfamily protein (.1) Lus10034022 [exp] 97 / 6e-23 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10004432 [exp] 94 / 6e-23 AT3G06180 241 / 3e-80 Ribosomal protein L34e superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G121900.1 pacid=42793846 polypeptide=Potri.004G121900.1.p locus=Potri.004G121900 ID=Potri.004G121900.1.v4.1 annot-version=v4.1 ATGGTCTATTTCCATAGCTCAATCTCGGTCTGCAACTCATTTGACCAGTCATCAACAGCTTCCATGGCAAATTCTGTGAATTCCAGTGAGTTTAATCCAA AATCAAGGCACAACAATAATCATGTGCACAAGAATAGGAAGACAGTGAATGGCTCGAATTGTAAAACTATACCTGTTTGTGATAGATCTCAATCAGCTGT TATTGATGTTGTGATCTTGATAGCTGTCATTGGTGCTTGTGGATTCTTGTTATTTCCTTATATCCGGATTGTAACTCTTGGTTTTATTGAATTTGTTGCT GCTATTCATTATGTGGTCAAAGAGGAGGTTATGAGAAATCCAGTGATATACGGATCTATAGGGATTAGTTCTTTATGTGCTGCAATAGTTGCCTGGATAG TGATTTTGTGTGCTGCTAGGAAATGTGGGAATCCGAACTGCAAGGGCTTAAGGAAGGCAGCAGAATTCGATATCCAGTTGGAGACCGAGGAGTGTGTGAA GAATTCTAATGGTACCTTGGTGAAAGATGGACTGAAAAGGGGCCTTTTTGAATTGCCTCACGATCATCATCGAGAATTGGAGGCTGAATTGAAGAAGATG GCACCAACTAATGGAAGAGCTGTTCTTGTGTTTCGAGCAAGGTGTGGATGTTCTGTTGGAAGATTGGAGGTTCCGGGACCTAAGAAGACAAAGAAGATCA AGAAGTAG
AA sequence Show only first row Show all	>Potri.004G121900.1 pacid=42793846 polypeptide=Potri.004G121900.1.p locus=Potri.004G121900 ID=Potri.004G121900.1.v4.1 annot-version=v4.1 MVYFHSSISVCNSFDQSSTASMANSVNSSEFNPKSRHNNNHVHKNRKTVNGSNCKTIPVCDRSQSAVIDVVILIAVIGACGFLLFPYIRIVTLGFIEFVA AIHYVVKEEVMRNPVIYGSIGISSLCAAIVAWIVILCAARKCGNPNCKGLRKAAEFDIQLETEECVKNSNGTLVKDGLKRGLFELPHDHHRELEAELKKM APTNGRAVLVFRARCGCSVGRLEVPGPKKTKKIKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01170			Ribosomal protein L34e superfa...		Potri.004G121900 [exp]	0	1
AT4G38060			unknown protein		Potri.002G106300 [exp]	1.73	0.7127
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	3.74	0.6368	Pt-TDY1.2
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	6.24	0.6837
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	6.92	0.6644
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	6.92	0.6972
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	7.41	0.6426	Pt-DREB1.3,DREB35
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	13.41	0.6398
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.008G020400 [exp]	14.28	0.6197
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	21.16	0.6363
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	21.90	0.6115

Compare expression of checked genes

Potri.004G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.