Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28970 297 / 2e-100 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) AT3G12760 102 / 1e-25 unknown protein AT1G15860 46 / 8e-06 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084300 [exp] 402 / 2e-142 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.008G083800 [exp] 96 / 5e-23 AT3G12760 415 / 1e-148 unknown protein Potri.018G112200 [exp] 48 / 3e-06 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 47 / 4e-06 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 47 / 5e-06 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030685 [exp] 303 / 1e-102 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 304 / 2e-102 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10009599 [exp] 96 / 5e-23 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 95 / 8e-23 AT3G12760 383 / 3e-136 unknown protein Lus10039198 [exp] 51 / 2e-07 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 50 / 6e-07 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 46 / 2e-05 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 44 / 4e-05 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 41 / 0.0008 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF03556 [poplar] [flax] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Potri.004G122100.2 pacid=42796428 polypeptide=Potri.004G122100.2.p locus=Potri.004G122100 ID=Potri.004G122100.2.v4.1 annot-version=v4.1 ATGGACTCACCGGGTTCAATCTTTGAGATTTACATCCGTTACCATGACATTAGATCACTAAAATCATGTCAAACGGATGGACATGATGAACACGAGGGTA AAATTTCCAGGGATGCTTTGGCTCAGCTTTCGAAAATTGTGGACTTAAAATTCCATTCAAGAACTTCAATTTTTGATGAACTTCTCAAGCTCATGTCAAA GCTAGAACTTATGGCGGATTTCTCAGAATTTTCTCGTTTCTATGATTTTGTATTCTTCATGTGCCGTGAAAATGGTCAAAAGAATATCACTGTAAACAAG GCTGTTACAGCATGGAAATTAATTTTAGCTGGGAGGTTTCGGTTGCTAAACCAATGGTGTGACTTTGTTCAGGAAAATCAACGACACAATATATCTGAGG ATACTTGGCAGCAAGTTTTAGCTTTTAGCCGGTGCGTACATGAAAATCTTGAAGGGTACGATCCTGAAGGTGCTTGGCCTGTCCTAATAGATGACTTTGT TGAGCACATGTACAGGGTATTGGGGTCAAACAGGGAGCCAAACTTTTTCTGTAATTGTGGTGATTCAGAGTCTCAATCATGCACATTCGAAGACCCTCTT CCTGGATTGAAAGATACTCCTGGTTTGAAGAGGAAGTTGTCTAGCTTTCAAATGGAGGAAATGGCGTCCTCAAATGCTGTCTTCCTTGATTCTGTCAGTC CAAATTTTATATTGAATTCAAAGAGAAGTAGGCTGATTGATTACAGACCATTGAACTGGGAGGATAATCCACCTGGTAATTCAGCCAGTGACGGCATGGA TATCACTAAGCAGAATAATTCGCTGGGGTCCATGAAATCTCCATGTGCAGTTGAAGGATGCTTGTCGAGGGGCTTTGCAGGTTTATTCTCAACTCGTTCC TATCTACAACTTGACCGGGAGAGGAGAGTCTCGTATACATAG
AA sequence Show only first row Show all	>Potri.004G122100.2 pacid=42796428 polypeptide=Potri.004G122100.2.p locus=Potri.004G122100 ID=Potri.004G122100.2.v4.1 annot-version=v4.1 MDSPGSIFEIYIRYHDIRSLKSCQTDGHDEHEGKISRDALAQLSKIVDLKFHSRTSIFDELLKLMSKLELMADFSEFSRFYDFVFFMCRENGQKNITVNK AVTAWKLILAGRFRLLNQWCDFVQENQRHNISEDTWQQVLAFSRCVHENLEGYDPEGAWPVLIDDFVEHMYRVLGSNREPNFFCNCGDSESQSCTFEDPL PGLKDTPGLKRKLSSFQMEEMASSNAVFLDSVSPNFILNSKRSRLIDYRPLNWEDNPPGNSASDGMDITKQNNSLGSMKSPCAVEGCLSRGFAGLFSTRS YLQLDRERRVSYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	0	1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G069500 [exp]	5.74	0.7941
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	6.00	0.8281	Pt-ATPDAT.2
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Potri.010G004600 [exp]	6.16	0.8335
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	7.74	0.7734
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	9.21	0.8188
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.005G070100 [exp]	9.21	0.7279
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	9.48	0.7952
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	9.59	0.8334	TXR1.1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.006G102400 [exp]	9.89	0.7897
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.001G372100 [exp]	12.12	0.7532

Compare expression of checked genes

Potri.004G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.